PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013593P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 392aa    MW: 44930.3 Da    PI: 4.4112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013593P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-19188238256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r r +lg+f+tae+Aa a+++ + kl+ge
  MELO3C013593P1 188 LYRGVRQRH-WGKWVAEIRLPRN---RNRLWLGTFDTAEDAALAYDREAFKLRGE 238
                     59******9.**********965...48*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.42E-34187247No hitNo description
SuperFamilySSF541711.24E-22188246IPR016177DNA-binding domain
SMARTSM003801.2E-39188251IPR001471AP2/ERF domain
PROSITE profilePS5103222.893188245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-32188246IPR001471AP2/ERF domain
PRINTSPR003671.6E-10189200IPR001471AP2/ERF domain
PfamPF008474.0E-12189238IPR001471AP2/ERF domain
PRINTSPR003671.6E-10211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSNFKSNLSL RTTDHDKNED KMDTNHNEFH QCSFPRQPGY PTSLLPPPFK KIRDPESHDP  60
IHPLDSISHH SFPFLNPPSS VSSPASTRPL FPFALEPSQF KTEPVASTVH QPPSVLPQHN  120
QLVAPPLAST QNGFGYPPYF MGEFASFQQQ KQQQQQHQQF LQYWNESLDL NSRAGFRPQV  180
RPLNATKLYR GVRQRHWGKW VAEIRLPRNR NRLWLGTFDT AEDAALAYDR EAFKLRGENA  240
RLNFPELFLN KDKEAEEEEE EEEEEEETSQ TSAPQQDVDN NNHDNDIELE SNNEGVTEEN  300
IQEEEEEEEE GISKTQEMVW REMAEAWLNA MPAGWGPGSP VWDDLDTTNN LLLQPQLQFV  360
NPIQQPSFDL TSASPSSSSC PMKPFFLKDE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21187245160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819180.0LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448413.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1S3BJM00.0A0A1S3BJM0_CUCME; ethylene-responsive transcription factor ERF054-like
STRINGXP_008448413.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-44ERF family protein