PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009669P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 331aa    MW: 37858.6 Da    PI: 5.425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009669P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-193786255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+ kl+g
  MELO3C009669P1 37 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDQAATKLYG 86
                    69****999.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-303696No hitNo description
PfamPF008473.1E-133786IPR001471AP2/ERF domain
SMARTSM003804.9E-3837100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-303795IPR001471AP2/ERF domain
PROSITE profilePS5103222.6163794IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-213795IPR016177DNA-binding domain
PRINTSPR003671.9E-103849IPR001471AP2/ERF domain
PRINTSPR003671.9E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MENGRDNKKP HTSPFHHKPW KKGPSRGKGG PQNASCEYRG VRQRTWGKWV AEIREPKKRT  60
RLWLGSFSTA EEAAMAYDQA ATKLYGPHAY LNLPHLANHN NDSSDYKSNL LKWVPSKNFI  120
SLFPHTNRAA AAVATTGSFM SLHLIHQRLQ QLKPPHSFLS SNSLSSPSKK LEDKGEKEKD  180
EEASVREETT TKTTATRSVE EEEKPQIDLN EFLQQLGILK EEEDEKLEIE LEGEKGNDNN  240
KDKDNDNDDR GCCLGSSEVS NNCDYSDEVE VLSDKSFNWD SIMEIHPNIE DNHFGNFQLY  300
DHHFLNYEDD LSFPNSIWDF EEDHSTRIIH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183894360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443124.10.0PREDICTED: dehydration-responsive element-binding protein 2F
TrEMBLA0A1S3B8110.0A0A1S3B811_CUCME; dehydration-responsive element-binding protein 2F
STRINGXP_008443124.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-49ERF family protein