PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008331P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 392aa    MW: 42144 Da    PI: 6.1734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008331P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20197246255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  MELO3C008331P1 197 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 246
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-33197255IPR001471AP2/ERF domain
PfamPF008473.3E-14197246IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22197255IPR016177DNA-binding domain
PROSITE profilePS5103225.712197254IPR001471AP2/ERF domain
SMARTSM003802.3E-36197260IPR001471AP2/ERF domain
PRINTSPR003671.0E-11198209IPR001471AP2/ERF domain
CDDcd000188.30E-15205256No hitNo description
PRINTSPR003671.0E-11220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MCSLKVANRR GIGSDLAQFP SGGAGDGDGD TGGGGSSSSD DPHRLLYGQR DDGDYTSGVG  60
EFSTIVSTLT NVMSGQAAPD WSYGGGGQGF VSSSSSASGS ERRYVPGMSY WVGQKRMREE  120
EISVETQHDF DSVSRGFSFR GFEDHISHSQ QGQSSNAPVK EEVPPPPHTA VSNPAAAFAP  180
SSLTSNDAVV IGERRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA EAAARAYDEA  240
ALRFRGNRAK LNFPENVRLI HPPQPAAVPS AALPQIAPQP TAAFQSQNYR DYIEYSNLLQ  300
NSGDILRQPS SLLQQMFYNA QLPPFESSSS PAPAPSMSSV SNSVFFNPTL QQQQMGIFRP  360
SPQNQNQGGS DYFPATSWDD SGGQYPSSSS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22196257466ATERF1
3gcc_A2e-22196257466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441501.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S3B4C60.0A0A1S3B4C6_CUCME; ethylene-responsive transcription factor ERF113-like
STRINGXP_008441501.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-17ERF family protein