PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008308P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 309aa    MW: 33473.7 Da    PI: 9.6052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008308P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-1871120255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  MELO3C008308P1  71 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAAIILYG 120
                     59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-2071128No hitNo description
SuperFamilySSF541719.81E-2171128IPR016177DNA-binding domain
PfamPF008477.4E-1271116IPR001471AP2/ERF domain
SMARTSM003802.2E-3871134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2971128IPR001471AP2/ERF domain
PROSITE profilePS5103222.41871128IPR001471AP2/ERF domain
PRINTSPR003671.5E-107283IPR001471AP2/ERF domain
PRINTSPR003671.5E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDPDHSPSSS SSHLLPQPKP LDHSSPSSPS PSSSNPSDSS PNNNNNINNN NNNNGARKRK  60
GKGGPDNNKF RYRGVRQRSW GKWVAEIREP RKRTRKWLGT FSTAEDAARA YDRAAIILYG  120
SRAQLNLQST SPNNNYSSSN SSSSSSSSRS SSSTSLRPLL PRPALSSTFS FSSMASSLPL  180
MPSPQSYTAI YPPSSSLIYP NLLHNQYPPQ LTQHPTHEII TSSTTTVTNC TPPISTTATP  240
SSPTTSYSQN PNNPTLLLAS PLPPLPSDLI LGPIGPSSPA VGWPSLDIND DDYLPSLWDY  300
HDPFFFDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1972127359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441640.10.0PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A1S3B3F10.0A0A1S3B3F1_CUCME; ethylene-responsive transcription factor ABI4
STRINGXP_008441640.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.17e-31ERF family protein