PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007560P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 282aa    MW: 31505.7 Da    PI: 4.5413
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007560P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.3e-36101002101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw+++g++f+v+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g++ell+k
  MELO3C007560P1  10 FLTKTYQLVDDPATDDVVSWNQSGSTFIVWKTADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFQRGHRELLSK 95 
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  MELO3C007560P1  96 IRRRK 100
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-37799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAQRSLPAPF LTKTYQLVDD PATDDVVSWN QSGSTFIVWK TADFARDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFQRGHR ELLSKIRRRK AVLISTPMQT VHPVKSGGGG  120
GNPSPSNSGE DIGSTSTSNP GSVEMGTIAQ FADLTEENDK LRKDNEMLNS ELVQTKKQCD  180
ELVAFLTDYL KVAPDQINRI MKQEANNRVA SQCSEGGADN GRIEEEEEEE EEEEEAEEEE  240
GETLKLFGVW LKGKKGKEDE KGTRGENGVQ QRTTCESNEV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2559925129Heat shock factor protein 1
5d5v_B3e-2559925129Heat shock factor protein 1
5d5v_D3e-2559925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440278.21e-163PREDICTED: LOW QUALITY PROTEIN: heat shock factor protein HSF24
SwissprotP223351e-103HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A1S3B0S01e-161A0A1S3B0S0_CUCME; LOW QUALITY PROTEIN: heat shock factor protein HSF24
STRINGXP_008440278.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-77heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]