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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007267P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27076.3 Da PI: 9.9435 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdps+ + r++lg+f+taeeAa+a+++a+++++g MELO3C007267P1 21 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDNAAREFRG 70 69*******.**********965...6************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.683 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.32E-31 | 21 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 21 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-13 | 21 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-40 | 21 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 21 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAPREKAVAV KPNVGNVKEV HFRGVRKRPW GRYAAEIRDP SKKSRVWLGT FDTAEEAARA 60 YDNAAREFRG VKAKTNFPLP SDDKLLNLNN KINNINNNQS PSQSSTVESS SREQALMVDS 120 SPLDLNLGHG IGGLTTAGPI SFPFQRYQIP MIGEVFTRGI PPSNHVLYFD AALRTGMINS 180 HPNQRLHFDR IREAVSDFRR DFAGSGVQSD SDSSSVVDMN GQDLKPRGGS GGRLDLDLNF 240 PPPESA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 17 | 79 | 1 | 64 | ATERF1 |
3gcc_A | 2e-21 | 17 | 79 | 1 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439819.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q40477 | 7e-44 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1S3B0A2 | 1e-180 | A0A1S3B0A2_CUCME; ethylene-responsive transcription factor 4-like | ||||
STRING | XP_008439819.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 8e-26 | ERF domain protein 11 |
Publications ? help Back to Top | |||
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