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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007241P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 31232.8 Da PI: 6.1064 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 120 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa a+++a+++++g MELO3C007241P1 120 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFNTAEEAALAYDKAALRIRG 170 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-32 | 119 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-23 | 120 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-38 | 120 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.723 | 120 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.38E-31 | 120 | 179 | No hit | No description |
Pfam | PF00847 | 1.1E-14 | 120 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MAIQQDQSEA ILENVWANYI GEKGLDGNGA TKSVSGLNKT WTELPSLCYR NGSMEVLERL 60 PSLGRWVSMG AEAWEELLDG IVPVNNTEQS VHEDLKNTPT SHSGFNVNTR RAEKVVATRH 120 YRGVRRRPWG KYAAEIRDSS RKGARVWLGT FNTAEEAALA YDKAALRIRG PKAHLNFPIE 180 TVTEATGIHL STRNDHLNSL MPSSFQGHDS SSHGNSSITG KRLTREWEDN FDFNIMEFEQ 240 PMLKRKTSIN NMFYDDFDVF EFQDLGSGYL DNLLSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-27 | 119 | 181 | 4 | 66 | ATERF1 |
3gcc_A | 5e-27 | 119 | 181 | 4 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439786.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A1S3B0A4 | 0.0 | A0A1S3B0A4_CUCME; ethylene-responsive transcription factor ERF091 | ||||
STRING | XP_008439786.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 1e-37 | ERF family protein |