PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006870P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 203aa    MW: 21406.7 Da    PI: 6.1064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006870P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.6e-162067355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++G+r  +++g+Wv+eIr+p+    + +r++lg++ t+e+Aa+a++ a++ l+g
  MELO3C006870P1 20 FRGIR--SRSGKWVSEIREPR----KaTRIWLGTYPTPEMAAAAYDVAALTLKG 67
                    79995..678*********94....36***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.4E-291981IPR001471AP2/ERF domain
PROSITE profilePS5103219.7831975IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-261976IPR001471AP2/ERF domain
CDDcd000183.03E-181977No hitNo description
PRINTSPR003671.9E-62031IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-182077IPR016177DNA-binding domain
PfamPF008477.8E-92167IPR001471AP2/ERF domain
PRINTSPR003671.9E-65777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSDNNNNNNS PLPPGRHRIF RGIRSRSGKW VSEIREPRKA TRIWLGTYPT PEMAAAAYDV  60
AALTLKGPNA SLNFPHSLLS YPIPPSTSPS DIRAAAAIAA AARNPNNTSP QASPAAATTI  120
TATTTEYSSV TEAIDGGGPS SHATGDCSGK FVDEEELLNM PNLLVDMAEG MLVSPPRMKS  180
PSSDDNSPNH SQGDDGLWSY SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1417781275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439163.11e-146PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ907e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S3AYS11e-144A0A1S3AYS1_CUCME; ethylene-responsive transcription factor ERF027
STRINGXP_008439163.11e-145(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-41ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]