PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006149P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 244aa    MW: 26737.7 Da    PI: 8.8162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006149P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-202979256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+ +l+ge
  MELO3C006149P1 29 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAAIALRGE 79
                    589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-342991IPR001471AP2/ERF domain
PfamPF008472.2E-152979IPR001471AP2/ERF domain
CDDcd000181.28E-302985No hitNo description
PROSITE profilePS5103220.4952986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-282986IPR001471AP2/ERF domain
PRINTSPR003672.1E-73041IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-203085IPR016177DNA-binding domain
PRINTSPR003672.1E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAGRETKRS ATVSRCISHS QPNKSPARRF VGVRQRPSGR WVAEIKDSSQ RVRLWLGTYD  60
TPEEAARAYD EAAIALRGEN ARTNFVSPAA GWSPDSKVSN IGVLKAKLSK NLQSIIARTS  120
EQSKSLKNRV SDRFTFGNIF NFRSYQSATM ADLTTIDKAA VQPSIIVPHV ETDQSGSWDS  180
SDGDGFRPLG FCSDGSEVAG DWWVDRILED DDYNEGLMSK RFRVSSSVVV PPTFSGSPTY  240
GEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1429851471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438105.11e-180PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A1S3AW801e-178A0A1S3AW80_CUCME; ethylene-responsive transcription factor ERF071-like
STRINGXP_008438105.11e-179(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-18related to AP2 11