PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C005972P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 201aa MW: 22078.5 Da PI: 7.2974

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C005972P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.6	3.6e-19	53	102	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr + +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++aa+++++g+ MELO3C005972P1 53 FRGVRKRN-WGKWVSEIREPRK---KTRIWLGTYPTPEMAARAHDAAALAIKGH 102 8**887.******843...6**********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.143	52	109	IPR001471	AP2/ERF domain
SMART	SM00380	4.6E-34	52	115	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-31	52	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-21	52	110	IPR016177	DNA-binding domain
PRINTS	PR00367	6.0E-10	53	64	IPR001471	AP2/ERF domain
Pfam	PF00847	6.9E-14	53	102	IPR001471	AP2/ERF domain
CDD	cd00018	3.67E-20	53	111	No hit	No description
PRINTS	PR00367	6.0E-10	75	91	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEPFFNYIEA SDAKATSFSH SPSITTHHEY QHLSSKNTKQ RTTIQRNRDH PMFRGVRKRN 60 WGKWVSEIRE PRKKTRIWLG TYPTPEMAAR AHDAAALAIK GHSAFLNFPE LAQFLPRPLS 120 RSHKDIQAAA AQAAAATFSS GINAESGGEE AVEESREPLF PGSDGGERTE DSTNSPSTIA 180 GDETLFDLPD LVIVLCGGRS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-17	49	109	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437812.1	1e-141	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	9e-45	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1S3AV07	1e-139	A0A1S3AV07_CUCME; ethylene-responsive transcription factor ERF038-like
STRING	XP_008437812.1	1e-140	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-33	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]