PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005088P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 229aa    MW: 24837.6 Da    PI: 5.2452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005088P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-192573355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++l+g
  MELO3C005088P1 25 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAAIAYDRAARSLRG 73
                    67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-342487IPR001471AP2/ERF domain
CDDcd000181.42E-292480No hitNo description
PROSITE profilePS5103220.4682481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-282581IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-212582IPR016177DNA-binding domain
PRINTSPR003673.4E-82536IPR001471AP2/ERF domain
PfamPF008473.6E-112773IPR001471AP2/ERF domain
PRINTSPR003673.4E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSPSPSKPKR KHHPRSPAEP TPHRFLGVRR RPWGRYAAEI RDPSTKERHW LGTFDTAEEA  60
AIAYDRAARS LRGSLARTNF LYSDSPPPPP PPYSASIHPS QPPLFLPLLP PPPPPLFHQF  120
PPAGDSPSGI IYGDYDGSSA ELPPFPPAIS SESENCDYNN YGAMESQNVG FECFDQSSIG  180
MGSCLGFDSS GDYMYNPMLG SMATVSDAGT GDLQSPAANF YLPQSSEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1824801471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437672.11e-126PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A1S3AU891e-125A0A1S3AU89_CUCME; ethylene-responsive transcription factor LEP
STRINGXP_008437672.11e-126(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-21ERF family protein