PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004359P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GeBP
Protein Properties Length: 369aa    MW: 42338.7 Da    PI: 4.6073
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004359P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57386.92.5e-27100196597
          DUF573   5 rlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +w++eDei lL+G++++  ++       +++d  afy+++k +i++   k+ql++K+rrLK+K+++  +k++ g++p+f++ hd+ +f++s+ki
  MELO3C004359P1 100 TIWTNEDEIKLLRGFLEYGLENRIsgrrLQQQDAFAFYRKIKPKIQLSCDKNQLIDKLRRLKRKYRNTLSKVDCGQKPAFKSLHDRLTFDISRKI 194
                     69****************77766544445667*************************************************************** PP

          DUF573  96 Wg 97 
                     Wg
  MELO3C004359P1 195 WG 196
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-25100196IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEEEDDEDQN TQPSDSDEHE THLNDDDDDE YQADSYQEDA QNNEQNAAVS DETDAADLHQ  60
SKTNSFSPIE DHIPTAIAIP ANATTNNIVT VAIPARRRTT IWTNEDEIKL LRGFLEYGLE  120
NRISGRRLQQ QDAFAFYRKI KPKIQLSCDK NQLIDKLRRL KRKYRNTLSK VDCGQKPAFK  180
SLHDRLTFDI SRKIWGRNSG RKQTSAEDSI LDEVLADINP NFTETKVKTE NLEDKYEERD  240
DLQLTKRRRT AFLSGEASNS NEIPMRPSSV LDDFGKISGL VEEVAKGCLT PFFKELMSNG  300
WPPVGLARRI PSSNGGEEAE ERWRKQQAIE MEVYLKRLEL VQEEIKITLE ELRSKEDESE  360
NNKLQNNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648769.10.0PREDICTED: mediator-associated protein 1
TrEMBLE5GBR90.0E5GBR9_CUCME; Uncharacterized protein
STRINGXP_004139376.10.0(Cucumis sativus)
STRINGXP_004156488.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-45DNA-binding storekeeper protein-related transcriptional regulator