PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003695P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 190aa    MW: 21234.8 Da    PI: 7.4639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003695P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18655255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr++  +g+Wv+eIr+p        +r++lg+f++ae+Aa+a+++a+  ++g
  MELO3C003695P1  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFDSAEDAARAYDQAAILMNG 55
                    89****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-32565IPR001471AP2/ERF domain
CDDcd000184.28E-33665No hitNo description
PfamPF008472.3E-11655IPR001471AP2/ERF domain
SMARTSM003802.9E-39669IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-20665IPR016177DNA-binding domain
PROSITE profilePS5103221.694663IPR001471AP2/ERF domain
PRINTSPR003674.9E-10718IPR001471AP2/ERF domain
PRINTSPR003674.9E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVYSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDSAE DAARAYDQAA ILMNGQNAKT  60
NFPASKDQSE EASHGHGSSP MSPKALSELL STKLRKCCKN PSPSLTCLRL DSDTAHIGVW  120
QKRAGTRATS NWVMRIELGK KEVPSSESTS CQEADGDDHQ NEIDEEDRIA MQMIEELLNW  180
NCPLPSTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-176631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466408.11e-140PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_008466410.11e-140PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9584e-79SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A1S3CR711e-139A0A1S3CR71_CUCME; ethylene-responsive transcription factor SHINE 2-like
STRINGXP_008466408.11e-140(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-71ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]