PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002679P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 410aa    MW: 46681.4 Da    PI: 4.9484
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002679P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.4e-34151052101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sws++ +sfvv+++ ef++ +Lpk+Fkhsnf+SF+RQLn+YgF+kv+ e+         weF+++ F +gk +l+++
  MELO3C002679P1  15 FLVKTYDMVDDPSTNSIVSWSSSDKSFVVWNPLEFSSVLLPKFFKHSNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFVRGKPHLMKN 100
                     9********************999****************************************9998.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  MELO3C002679P1 101 IHRRK 105
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.8E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-6011104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.2E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDEAQGGGLT SLPPFLVKTY DMVDDPSTNS IVSWSSSDKS FVVWNPLEFS SVLLPKFFKH  60
SNFSSFIRQL NTYGFRKVDP EQWEFANEDF VRGKPHLMKN IHRRKPIHSH SLQNLHGQGI  120
SPLTEVERNS FKDNIERLKL DKEQLLLELQ KYEQEYQGVG LQMQNLKDRF QRVQQGMQLF  180
IGLMARLFQK PGLRLDLLPQ LETPERKRRL PRASYNISED SLEDDQLGTT QAIGREDLSC  240
SFDPILEKEQ LELLETSLTF WEGIIHSYDQ TVIPLDSSSN LELVGSVSHA SSPAISCRLV  300
REEFRCKSPG IDMNLEPMAT VAPDSVASKD QAAGVNAPLP TGFNDVFWQQ FLTENPGASD  360
PQEVQSARKD SDVINEENKQ SDHENFWWNT RSVNNIVEQI GHLKPAEKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-21810422129Heat shock factor protein 1
5d5v_B1e-21810422129Heat shock factor protein 1
5d5v_D1e-21810422129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443546.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_008443555.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_008443573.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_016900024.10.0PREDICTED: heat stress transcription factor A-4c
TrEMBLA0A1S4DVL40.0A0A1S4DVL4_CUCME; heat stress transcription factor A-4c
STRINGXP_008443546.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-104heat shock transcription factor A4A