PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002624P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 212aa    MW: 23143.6 Da    PI: 9.818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002624P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.45e-202676256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa++k++g+
  MELO3C002624P1 26 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAARKFRGA 76
                    69*******.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-132675IPR001471AP2/ERF domain
PROSITE profilePS5103224.0522683IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-222684IPR016177DNA-binding domain
CDDcd000181.22E-192683No hitNo description
Gene3DG3DSA:3.30.730.101.6E-322683IPR001471AP2/ERF domain
SMARTSM003804.7E-382689IPR001471AP2/ERF domain
PRINTSPR003674.1E-112738IPR001471AP2/ERF domain
PRINTSPR003674.1E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAPRDKVKAA SAAVTASSGS KDMEVHFRGV RKRPWGRYAA EIRDPAKKSR VWLGTFDTAE  60
EAARAYDAAA RKFRGAKAKT NFPLPPTVND LNLSPSRSST VESSSRDPTD FDLNQDASGS  120
RPPFPSQQHQ FGGGIFPQQS NQFRFLDHPI FRNGTESGVI YDRHRVKAVV QCGGVQSDSD  180
SSSVINLNQN DDHKSRPALD LDLNFPPPDS A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-222684564ATERF1
3gcc_A1e-222684564ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442824.11e-154PREDICTED: ethylene-responsive transcription factor 8
TrEMBLA0A1S3B6N31e-153A0A1S3B6N3_CUCME; ethylene-responsive transcription factor 8
STRINGXP_008442824.11e-154(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-22erf domain protein 9