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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C002085P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 338aa MW: 38909.9 Da PI: 5.1447 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1e-15 | 98 | 145 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 ykGVr++k +g+++AeIrd + r +r +lg++ taeeAa a+ + + ++e MELO3C002085P1 98 YKGVRRRK-WGKYAAEIRDpF-----RgRRLWLGTYNTAEEAAVAYQRKKHEFE 145 9****998.**********66.....56******************88877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-17 | 96 | 154 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.585 | 97 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-21 | 97 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-16 | 97 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-9 | 98 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 98 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.40E-22 | 98 | 139 | No hit | No description |
PRINTS | PR00367 | 5.9E-9 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MYGKEEKKMK QLKEGKSISM RKIRVLFHDP DATDYSSEED EHVSQGAKKI VWEIPIPDIH 60 RKPSEVSSQK ERADRVKFRA KTEVKDSSRR TQRSSSMYKG VRRRKWGKYA AEIRDPFRGR 120 RLWLGTYNTA EEAAVAYQRK KHEFESMQSM ENYSSELSGG KFEEKKIKSL VDDTAESEEI 180 IAMFSHPSPS SVLDLCTGSL CSNGLKNVIE EFNVDQTREH TITKKKSKAV LDGVENMLEY 240 ICNDEQHISN ILEEAPMSSM RMPIPPLDAR EMNFQVLEDN AMICNDFDQL SNDMNYIDNC 300 TLYNIENSLG AIDLPPMDIE FDKEFSWFDE TLSISCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 98 | 161 | 6 | 70 | ATERF1 |
3gcc_A | 5e-15 | 98 | 161 | 6 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 104 | KGVRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137472.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF3-like | ||||
TrEMBL | A0A0A0LTN0 | 0.0 | A0A0A0LTN0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161846.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13451 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-21 | ERF family protein |