PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023484
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 358aa    MW: 39132.4 Da    PI: 4.263
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023484genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.8e-11188232448
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                +k+ rr  +NR AA rsR+RKk++++ Le k+k Le+e ++L   
  Cla023484 188 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRL 232
                7999**********************************9888654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-12183247No hitNo description
SMARTSM003383.3E-5184249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.772187244IPR004827Basic-leucine zipper domain
PfamPF001703.2E-9188239IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10189245No hitNo description
CDDcd147041.33E-16190241No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEDLHFSEY DLIGQIDWND FFDEFPEVEL PLAGDSTSPH GSPDSFSSWI NHLENALLND  60
DQDKGVSLPT PTDDCCDSFL ADVLVDTHGG ASVIDLDSNA SDCGNQFSSS QKEDGHKVSP  120
APTDDSCGSF MAEVLVDTHG SSSGVDAVVD VLSNASDCGD DSNNSQKEKI DATNIDDSVG  180
EDVDDSLSKK RRRQLRNRDA AVRSRERKKM YVKDLEMKSK FLEGECRRLG RLLQCYCAEN  240
QALRFSLQMG GASGASLTKQ ESAVLLLESL LLGSLLWLVG TVCLFTLPQL PQSTLEPVPR  300
VTMEDEGPGS APLNENENKD SRYSYTSLQT RRCKAARTRM KPSMLDAMLG PSLALISV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189208KRRRQLRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-110LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-110LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453026.10.0PREDICTED: bZIP transcription factor 60
TrEMBLA0A1S3BWD70.0A0A1S3BWD7_CUCME; bZIP transcription factor 60
STRINGXP_008453026.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120093032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.18e-16basic region/leucine zipper motif 60