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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 756aa MW: 82685.6 Da PI: 5.7531 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 92 | 148 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Cla010488 92 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 148 688999************************************************995 PP | |||||||
2 | START | 226.1 | 1.1e-70 | 283 | 503 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela +a++el ++a+ +ep+W++s +n+de+l++f+++ + ++ ea+r+s+vv+m++ +lve+l+d++ qW++ + +a+tlev+s+ Cla010488 283 ELAVAAMEELTRMAQMGEPLWMTSLdgstHVLNEDEYLRTFPRGIGpkpsgFKCEASRESAVVIMNHINLVEILMDVN-QWSTLFSgivsRAMTLEVLST 381 57899********************9999999***********999********************************.********************* PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180 g galq+m++e+q++splvp R+++fvRy++q+g+g+w++vdvS+d ++ p +vR++++pSg+li++++ng+skvtwvehv++++r +h+l Cla010488 382 GvagnynGALQVMTSEFQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDDLRPTP----GVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNL 477 *******************************************************99....6************************************** PP HHHHHHHHHHHHHHHHHHHTXXXXXX CS START 181 lrslvksglaegaktwvatlqrqcek 206 +++lv+sg+a+gak+wv tl+rqce+ Cla010488 478 YKQLVSSGQAFGAKRWVTTLDRQCER 503 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 72 | 147 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-20 | 78 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-20 | 90 | 153 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-18 | 92 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.38E-19 | 92 | 150 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.382 | 274 | 506 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.58E-38 | 274 | 505 | No hit | No description |
CDD | cd08875 | 7.18E-132 | 278 | 502 | No hit | No description |
SMART | SM00234 | 2.4E-67 | 283 | 503 | IPR002913 | START domain |
Pfam | PF01852 | 6.6E-60 | 284 | 503 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.5E-7 | 374 | 472 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.15E-25 | 522 | 748 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MPAGIMTPAR SMASMIGRNE NNAAGFASPS GFPLSQSSMM DSHLLPLDIP QNTSESDLAR 60 IRDDDFDSAT KSGSDNNPDL VSGDDQDPRP KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ 120 RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERHENTQLRT ENEKLRADNM RYREALSNAS 180 CPNCGGPTAI GEMSFDEHHL RLENARLREE IDRISAIAAK YVGKPVVNYP LLSPPVPARP 240 LELGMGNFGP QPGLGGGDLY SSASDLIRSI SAPTEADKPM IIELAVAAME ELTRMAQMGE 300 PLWMTSLDGS THVLNEDEYL RTFPRGIGPK PSGFKCEASR ESAVVIMNHI NLVEILMDVN 360 QWSTLFSGIV SRAMTLEVLS TGVAGNYNGA LQVMTSEFQV PSPLVPTRES YFVRYCKQHG 420 DGTWAVVDVS LDDLRPTPGV RCRRRPSGCL IQEMPNGYSK VTWVEHVEVD DRGVHNLYKQ 480 LVSSGQAFGA KRWVTTLDRQ CERLASALAT NIPTGDVGVI TNQEGRKSML KLAERMVISF 540 CAGVSASTTH TWTTLSGTGA DDVRVMTRKS IDDPGRPPGI VLSAATSFWL HVPPKRIFDF 600 LRDENSRSEW DILSNGGVVQ EMAHIANGRD TGNCVSLLRV NSANSSQSNM LILQESCTDP 660 TASFVIYAPV DIVAMNVVLN GGDPDYVALL PSGFAILPDG AGGEGVSGGS LLTVAFQILV 720 DSVPTAKLSL GSIATVNNLI ACTVERIKAS LSCENA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681916 | 1e-169 | LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037. | |||
GenBank | LN713265 | 1e-169 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455850.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A1S3C1V0 | 0.0 | A0A1S3C1V0_CUCME; homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
STRING | XP_008455850.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |