PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 756aa    MW: 82685.6 Da    PI: 5.7531
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010488genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2092148157
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Cla010488  92 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 148
                688999************************************************995 PP

2START226.11.1e-702835031206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a++el ++a+ +ep+W++s       +n+de+l++f+++ +     ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+tlev+s+
  Cla010488 283 ELAVAAMEELTRMAQMGEPLWMTSLdgstHVLNEDEYLRTFPRGIGpkpsgFKCEASRESAVVIMNHINLVEILMDVN-QWSTLFSgivsRAMTLEVLST 381
                57899********************9999999***********999********************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      galq+m++e+q++splvp R+++fvRy++q+g+g+w++vdvS+d  ++ p    +vR++++pSg+li++++ng+skvtwvehv++++r +h+l
  Cla010488 382 GvagnynGALQVMTSEFQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDDLRPTP----GVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNL 477
                *******************************************************99....6************************************** PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                +++lv+sg+a+gak+wv tl+rqce+
  Cla010488 478 YKQLVSSGQAFGAKRWVTTLDRQCER 503
                ************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-2272147IPR009057Homeodomain-like
SuperFamilySSF466896.27E-2078149IPR009057Homeodomain-like
PROSITE profilePS5007117.05489149IPR001356Homeobox domain
SMARTSM003892.4E-2090153IPR001356Homeobox domain
PfamPF000464.1E-1892147IPR001356Homeobox domain
CDDcd000861.38E-1992150No hitNo description
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084845.382274506IPR002913START domain
SuperFamilySSF559617.58E-38274505No hitNo description
CDDcd088757.18E-132278502No hitNo description
SMARTSM002342.4E-67283503IPR002913START domain
PfamPF018526.6E-60284503IPR002913START domain
Gene3DG3DSA:3.30.530.207.5E-7374472IPR023393START-like domain
SuperFamilySSF559616.15E-25522748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MPAGIMTPAR SMASMIGRNE NNAAGFASPS GFPLSQSSMM DSHLLPLDIP QNTSESDLAR  60
IRDDDFDSAT KSGSDNNPDL VSGDDQDPRP KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ  120
RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERHENTQLRT ENEKLRADNM RYREALSNAS  180
CPNCGGPTAI GEMSFDEHHL RLENARLREE IDRISAIAAK YVGKPVVNYP LLSPPVPARP  240
LELGMGNFGP QPGLGGGDLY SSASDLIRSI SAPTEADKPM IIELAVAAME ELTRMAQMGE  300
PLWMTSLDGS THVLNEDEYL RTFPRGIGPK PSGFKCEASR ESAVVIMNHI NLVEILMDVN  360
QWSTLFSGIV SRAMTLEVLS TGVAGNYNGA LQVMTSEFQV PSPLVPTRES YFVRYCKQHG  420
DGTWAVVDVS LDDLRPTPGV RCRRRPSGCL IQEMPNGYSK VTWVEHVEVD DRGVHNLYKQ  480
LVSSGQAFGA KRWVTTLDRQ CERLASALAT NIPTGDVGVI TNQEGRKSML KLAERMVISF  540
CAGVSASTTH TWTTLSGTGA DDVRVMTRKS IDDPGRPPGI VLSAATSFWL HVPPKRIFDF  600
LRDENSRSEW DILSNGGVVQ EMAHIANGRD TGNCVSLLRV NSANSSQSNM LILQESCTDP  660
TASFVIYAPV DIVAMNVVLN GGDPDYVALL PSGFAILPDG AGGEGVSGGS LLTVAFQILV  720
DSVPTAKLSL GSIATVNNLI ACTVERIKAS LSCENA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819161e-169LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132651e-169LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455850.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S3C1V00.0A0A1S3C1V0_CUCME; homeobox-leucine zipper protein HDG2-like isoform X1
STRINGXP_008455850.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2