PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007577
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 125aa    MW: 14136.6 Da    PI: 5.9864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007577genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-201667256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr+++ +g+++AeIrd s ng  +r++lg+f taeeAa+a+++a+  ++g+
  Cla007577 16 RYRGVRRRP-WGKFAAEIRDSSRNG--ARIWLGTFNTAEEAARAYDRAAYLMRGH 67
               6********.**********55465..************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.32E-191675No hitNo description
SMARTSM003804.9E-371680IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-241675IPR016177DNA-binding domain
PfamPF008477.2E-151667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-311676IPR001471AP2/ERF domain
PROSITE profilePS5103223.5781674IPR001471AP2/ERF domain
PRINTSPR003678.8E-121728IPR001471AP2/ERF domain
PRINTSPR003678.8E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDEEGRSNND QGGEVRYRGV RRRPWGKFAA EIRDSSRNGA RIWLGTFNTA EEAARAYDRA  60
AYLMRGHLAV LNFPNEYPSL GGSSSNSAAA PRRQGQGDQS QVIELECLDD KVLEELLEYE  120
EKRKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3311121114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460635.12e-51PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC51e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3CCW35e-50A0A1S3CCW3_CUCME; ethylene-responsive transcription factor ERF098
STRINGXP_008460635.19e-51(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-20ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]