PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla001326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GeBP | ||||||||
Protein Properties | Length: 423aa MW: 46228.6 Da PI: 5.7421 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 133.6 | 7e-42 | 189 | 285 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 klfqrlwse+Dei++L G+id+ ak+g++p d++af++f+kks++++v+k qlv+KirrLKkK++++ ++ k+g +p+fsk+h+qk felskkiWg Cla001326 189 KLFQRLWSEDDEIAILNGMIDYSAKKGADPALDMNAFHDFIKKSLHVDVTKAQLVDKIRRLKKKYRNNADRGKKGADPTFSKPHEQKGFELSKKIWG 285 579*********************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-37 | 191 | 285 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSSEE EETSSGEEEE GVSRDGSSSE EEEDEEETQA QTQIQKLKKP 60 SALPSTPIVE KKTVPKKSEL PSNSQAQSSS SESGSGSDTD SDTESGRNVK PIASKPMEET 120 PKAKKPRSKP SASASASASA SATPARPSLK RPSETTRDAK RPKKSSEADA DDGVVAEDDP 180 KKSVDESKKL FQRLWSEDDE IAILNGMIDY SAKKGADPAL DMNAFHDFIK KSLHVDVTKA 240 QLVDKIRRLK KKYRNNADRG KKGADPTFSK PHEQKGFELS KKIWGGEGIF RTPVVEQPKP 300 NANGTPKKNQ RGNTSKTLAS LKAELLPSPD APKEDDKMKI DDSEAPSGCM DGFVAFERSL 360 GAVGLPESFL KPGLELIGQS KRTELEEEWK KLYLAELELF LKRTELIRDQ TKLILDAYKS 420 SSK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439944.1 | 0.0 | PREDICTED: mediator-associated protein 1 | ||||
TrEMBL | A0A1S3B0Q1 | 0.0 | A0A1S3B0Q1_CUCME; mediator-associated protein 1 | ||||
STRING | XP_008439944.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 4e-38 | DNA-binding storekeeper protein-related transcriptional regulator |