PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla000111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 196aa MW: 22589.9 Da PI: 8.6529 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 65 | 119 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F++n++++ +++e LA+ l+L+ rqV vWFqNrRa+ k Cla000111 65 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSK 119 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.9 | 2.3e-37 | 65 | 153 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+sF+++++L+p++K++la+ L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ l+e+n+rL+keveeLr + Cla000111 65 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELR-A 153 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-19 | 45 | 119 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-19 | 48 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.637 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-18 | 63 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.19E-17 | 64 | 122 | No hit | No description |
Pfam | PF00046 | 2.0E-16 | 65 | 119 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.7E-21 | 121 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.6E-9 | 121 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAILPTTSSR LDLSISVPGF NSFSSPLPPS VGRDLDMNKA PDEEEWMMGS MEEDEENNNG 60 SNNPRKKLRL TKEQSHLLEQ SFRQNHTLNP KQKETLAEVL KLKPRQVEVW FQNRRARSKL 120 KQTEMECEYL KRWFGLLTEQ NKRLQKEVEE LRAMKVAPPT VISPHSCEPL PASNLTMCPR 180 CERVTTTALD KTRIVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681905 | 2e-80 | LN681905.1 Cucumis melo genomic scaffold, anchoredscaffold00033. | |||
GenBank | LN713264 | 2e-80 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654500.1 | 1e-137 | PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1 | ||||
Swissprot | Q0JKX1 | 4e-77 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q8S9N6 | 1e-76 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
Swissprot | Q9XH38 | 4e-77 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0A0KJE2 | 1e-135 | A0A0A0KJE2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142329.1 | 1e-135 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9506 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 3e-75 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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