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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5070s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 746aa MW: 81478 Da PI: 5.7591 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 62 | 117 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL++ l+L+ qVk+WFqN+R+++k Cagra.5070s0005.1.p 62 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQVKFWFQNKRTQMK 117 688999***********************************************998 PP | |||||||
2 | START | 219.4 | 1.2e-68 | 252 | 472 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++elv++a+a +p+Wv+ e++n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + + Cagra.5070s0005.1.p 252 ELAVAAMEELVRMAQAVDPLWVSTDnsiEILNEEEYFRTFPRGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSCIFSgivsR 340 57899******************99999**************999********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ + ++ R +++pSg+li++++ng+ Cagra.5070s0005.1.p 341 ALTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGSWAVVDVSLDSLRPST---PILRTRRRPSGCLIQELPNGY 427 ***************************************************************976...7******************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 skvtw+eh+++++r++h+++++lv+sgla+gak+wvatl+rqce+ Cagra.5070s0005.1.p 428 SKVTWIEHMEVDDRSVHNMYKPLVHSGLAFGAKRWVATLERQCER 472 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 42 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-18 | 51 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 60 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.60E-18 | 62 | 120 | No hit | No description |
Pfam | PF00046 | 3.7E-17 | 62 | 117 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.088 | 243 | 475 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.24E-35 | 245 | 474 | No hit | No description |
CDD | cd08875 | 2.54E-125 | 247 | 471 | No hit | No description |
SMART | SM00234 | 2.4E-76 | 252 | 472 | IPR002913 | START domain |
Pfam | PF01852 | 4.7E-58 | 253 | 472 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.0E-7 | 351 | 472 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.73E-26 | 491 | 730 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MYHPNMFESH HMFDMTTKST SDNDLGITGS REDDFETKSG AEVTTENPGE ELQDPNQRPN 60 KKKRYHRHTQ RQIQELESFF KECPHPDDKQ RKELSRDLNL EPLQVKFWFQ NKRTQMKAQS 120 ERHENQILKS DNDKLRAENN RYKEALSNAT CPNCGGPAAI GEMSFDEQHL RIENARLREE 180 IDRISAIAAK YVGKPLGTSF APLAIHAPSR SLDLEVGNFG NQTGFGGDMY GTGDILRSVS 240 IPSETDKPII VELAVAAMEE LVRMAQAVDP LWVSTDNSIE ILNEEEYFRT FPRGIGPKPL 300 GLRSEASRES AVVIMNHINL VEILMDVNQW SCIFSGIVSR ALTLEVLSTG VAGNYNGALQ 360 VMTAEFQVPS PLVPTRENYF VRYCKQHSDG SWAVVDVSLD SLRPSTPILR TRRRPSGCLI 420 QELPNGYSKV TWIEHMEVDD RSVHNMYKPL VHSGLAFGAK RWVATLERQC ERLASSMANN 480 IPGDLSVITS PEGRKSMLKL AERMVMSFCS GVGASTAHAW TTMSTTGSDD VRVMTRKSMD 540 DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRKEWDI LSNGGMVQEM AHIANGREPG 600 NCVSLLRVNS GNSSQSNMLI LQESCTDASG SYVIYAPVDI VAMNVVLSGG DPDYVALLPS 660 GFAILPDGSV GGGDGNHQEV VSSTSAGSCG GSLLTVAFQI LVDSVPTAKL SLGSVATVNS 720 LIKCTVERIK AAVACDAGGG GGGGA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5070s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF424560 | 0.0 | AF424560.1 Arabidopsis thaliana AT4g04890/T1J1_3 mRNA, complete cds. | |||
GenBank | AY062575 | 0.0 | AY062575.1 Arabidopsis thaliana Unknown protein (At4g04890; T1J1.3) mRNA, complete cds. | |||
GenBank | BT000144 | 0.0 | BT000144.1 Arabidopsis thaliana Unknown protein (At4g04890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636874.1 | 0.0 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Refseq | XP_023636875.1 | 0.0 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | R0FD46 | 0.0 | R0FD46_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5070s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5070s0005.1.p |
Publications ? help Back to Top | |||
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