PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3527s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 316aa    MW: 34678.9 Da    PI: 8.1461
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3527s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-19161215256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Lee F+++++++ +++  LAk+l+L++rqV vWFqNrRa+ k
  Cagra.3527s0014.1.p 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLQTRQVEVWFQNRRARTK 215
                          788899***********************************************98 PP
2HD-ZIP_I/II123.31.1e-39161250191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+lq+rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +
  Cagra.3527s0014.1.p 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLQTRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVSELR-A 249
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Cagra.3527s0014.1.p 250 L 250
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.7E-361118IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466893.76E-19142218IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-19145211IPR009057Homeodomain-like
PROSITE profilePS5007117.394157217IPR001356Homeobox domain
SMARTSM003896.9E-16159221IPR001356Homeobox domain
CDDcd000867.14E-16161218No hitNo description
PfamPF000462.6E-16161215IPR001356Homeobox domain
PROSITE patternPS000270192215IPR017970Homeobox, conserved site
SMARTSM003404.3E-26217260IPR003106Leucine zipper, homeobox-associated
PfamPF021837.5E-11217251IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGFTP KEPSSRFNPM PMASYSSSSH MHMQQQSNYS HPHKIQNSWI  60
NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDDAAGVS SPNSTVSSVV SGKRSERELM  120
AAAAAAGGGR AEDNEMERAS CSLGGGSDDE DGSGNGDDGS RKKLRLSKEQ ALVLEETFKE  180
HSTLNPKQKM ALAKQLNLQT RQVEVWFQNR RARTKLKQTE VDCEYLRRCC ENLTEENRRL  240
QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMT SSSPMGQMSP  300
WAAIPLRQRP AAGSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165SRKKLRL
2209217RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3527s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4407810.0AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene).
GenBankAY0995650.0AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
GenBankBT0087130.0BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291451.20.0homeobox-leucine zipper protein HAT3
SwissprotP466020.0HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLR0H4X80.0R0H4X8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.3527s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-133homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]