PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3373s0039.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 805aa    MW: 88003.5 Da    PI: 6.5819
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3373s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-20124179156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Cagra.3373s0039.1.p 124 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 179
                          688999***********************************************999 PP
2START185.92.2e-583235422206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          la++a++elvk+a+ +ep+Wv+ss    + +n++e+ ++f++  +     + +ea+++ g v+ ++  lve+l+d+  +W e+++    +
  Cagra.3373s0039.1.p 323 LALAAMDELVKMAQTREPLWVRSSdtgfDVLNQEEYDTSFSRCVGpkpdgFVSEASKEAGTVIINSLALVETLMDSE-RWAEMFPsmisR 411
                          6899************************66677777666655333677889**************************.*******9999* PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                           +t+e issg      gal+lm+aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+
  Cagra.3373s0039.1.p 412 TSTTEIISSGmggsrnGALHLMQAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGY 497
                          *****************************************************************9.777766...************** PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          skvtw+eh++++++ +h l+r+l++ gla+ga +w+a+lqrqce+
  Cagra.3373s0039.1.p 498 SKVTWIEHTEYDEKRIHRLYRPLLSCGLAFGAHRWMAALQRQCEC 542
                          *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-20112181IPR009057Homeodomain-like
SuperFamilySSF466892.63E-19112181IPR009057Homeodomain-like
PROSITE profilePS5007117.07121181IPR001356Homeobox domain
SMARTSM003891.9E-18122185IPR001356Homeobox domain
CDDcd000861.14E-17124181No hitNo description
PfamPF000461.8E-17124179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084840.286313545IPR002913START domain
SuperFamilySSF559616.32E-31317542No hitNo description
CDDcd088753.94E-112317541No hitNo description
SMARTSM002342.0E-46322542IPR002913START domain
PfamPF018529.2E-51323542IPR002913START domain
SuperFamilySSF559611.51E-18571796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MNFNGFLDDH SSGVDGAGAS KLLSDVPYNN HFSFSAVDTM LGTTAITPPH HSLTPHSRPF  60
SSSPGLSLGL QTNGEMSRNG EVLEPNVSRK TSRGEDVESR SESDNAEALS GDDLDTSDRP  120
FKKKKRYHRH TPKQIQDLES VFKECAHPDE KQRLDLSRRL NLDPRQVKFW FQNRRTQMKT  180
QIERHENALL RQENDKLRAE NMSVREAMMN PMCGNCGGPA VIGDISMEEQ HLRIENSRLK  240
DELDRVCALT GKFLGRSNGS HYIPDSALVL GVGLGCSNGG GGFTLSSPRF EISNGTGSGL  300
ATVNHQPPVS VSDFDHRSRY LDLALAAMDE LVKMAQTREP LWVRSSDTGF DVLNQEEYDT  360
SFSRCVGPKP DGFVSEASKE AGTVIINSLA LVETLMDSER WAEMFPSMIS RTSTTEIISS  420
GMGGSRNGAL HLMQAELQLL SPLVPVRQVS FLRFCKQHAE GVWAVVDVSI DSIREGSSSS  480
CRRLPSGCLV QDMANGYSKV TWIEHTEYDE KRIHRLYRPL LSCGLAFGAH RWMAALQRQC  540
ECLTILMSST VSPSPIPTPI NCNGRKSMLK LAKRMTDNFC GGVCASSLQK WSKLNVGNVD  600
EDVRIMTRKS VNNPGEPPGI VLNAATSVWM PVSPRRLFDF LGNERLRSEW DILSNGGPMK  660
EMAHIAKGHD HSNSVSLLRA SAVNANQSSM LILQETSIDA AGAVVVYAPV DIPAMQAVMN  720
GGDSAYVALL PSGFAILPNA GTQREESNGG SWMEEGGSLL TVAFQILVNS LPTAKLTVES  780
VETVNNLISC TVQKIKAALH CDST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3373s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508660.0AY050866.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
GenBankAY0967570.0AY096757.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290613.10.0homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLR0FNB90.0R0FNB9_9BRAS; Uncharacterized protein
STRINGCagra.3373s0039.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]