PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2622s0025.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 363aa    MW: 40093.2 Da    PI: 6.3336
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2622s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-07648339
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         e+kC+ +   ++ ++C+++   +C +C ++ H+       Ht+
  Cagra.2622s0025.1.p  6 EPKCDYCATAQAVIYCKSDLAKVCLNCDVHVHSAnllshrHTR 48
                         799******99********************966888855655 PP
2CCT62.21.6e-21305348144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a+lRYkeKr +R F K+irY+sRKa+A+sR+RvKGrFvk+ 
  Cagra.2622s0025.1.p 305 RNQAKLRYKEKRLKRSFGKQIRYASRKARADSRKRVKGRFVKAG 348
                          99***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.2E-8451IPR000315B-box-type zinc finger
PfamPF006431.0E-5648IPR000315B-box-type zinc finger
CDDcd000213.04E-5751No hitNo description
PfamPF062035.2E-16305347IPR010402CCT domain
PROSITE profilePS5101714.555305347IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSPSIEPKCD YCATAQAVIY CKSDLAKVCL NCDVHVHSAN LLSHRHTRSL ICQKCFSQPA  60
VIRCLDDKVS YCQGCHWHAS NCSVLGHRLQ SLNPFSGCPS PTDFNRMWSS ILEPSVSGLV  120
CPLVGSLPLN DPNNTAFGLA KINELDGLIA SSYSLVPHNN ISYTQSFSDQ SSFFSDESKG  180
CPDLVLELED DLCEELNLDN APLNFDVGDD IIRFSLEEPD HMTTSPGQQD CTNYLSGPFQ  240
MNINTIGLPL PPSPVLFGQI HPTMSPTISN ITGESSAADY RMSPGFIMSE APWESNLELP  300
CPQARNQAKL RYKEKRLKRS FGKQIRYASR KARADSRKRV KGRFVKAGDN YDYDPSSPPN  360
NQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2622s0025.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0007391e-131AP000739.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MEK6.
GenBankCP0026861e-131CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300206.10.0zinc finger protein CONSTANS-LIKE 12
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLR0HTG40.0R0HTG4_9BRAS; Uncharacterized protein
STRINGCagra.2622s0025.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-151B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]