PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2098s0060.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 698aa    MW: 78567.4 Da    PI: 6.0344
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2098s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182879556
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++++++q+++Le++F+++++p+ ++r++L ++l+L+ +q+k+WFqN+R++ k
  Cagra.2098s0060.1.p 28 HRHSPQQIQRLEAYFKECPHPDGSQRRQLCQELKLEANQIKFWFQNKRTQCK 79
                         5789********************************************9988 PP
2START120.52.2e-382114313206
                          HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTE...EEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   3 aeeaaqelvkkalaeepgWvkss.......esengde...vlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          a +a +el ++ laee++Wvkss       +se +++   +++ f ++   ++e ++++++v+ ++++l e +ld+  +W+e ++    k
  Cagra.2098s0060.1.p 211 AACAVEELKRLFLAEEQFWVKSSidgtyviDSESYEKfsrCVKHFRSTS-AHVESSKDVTMVPIEATTLIEMFLDSE-KWKEFFPtivnK 298
                          6789999****************88866664444443222555554444.6**************************.************ PP

                          EEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  79 aetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          a+t+  + s        ++l +m  +l  lsplvp R+f++vR++++ ++g w+i+dvS ++  +   ++s+    ++pSg+li++++n 
  Cagra.2098s0060.1.p 299 AKTIHELGSElpirencNVLLVMWEQLHILSPLVPpREFMIVRCCQEIQKGLWIIADVSHNVGFDFV-NASC---YKRPSGCLIQSLPNA 384
                          **************************************************************99888.4555...559************ PP

                          EEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          hskv w+ehv+++ +l  h ++r + + g+  gak+w  tl+r ce+
  Cagra.2098s0060.1.p 385 HSKVMWIEHVEVDHKLDsHKMYREVSSGGTGYGAKRWIVTLERMCER 431
                          ****************88***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.38E-17882IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-19883IPR009057Homeodomain-like
PROSITE profilePS5007115.8072181IPR001356Homeobox domain
SMARTSM003892.3E-142385IPR001356Homeobox domain
CDDcd000864.42E-162482No hitNo description
PfamPF000464.4E-162879IPR001356Homeobox domain
PROSITE profilePS5084837.027200434IPR002913START domain
SuperFamilySSF559613.52E-25201432No hitNo description
CDDcd088751.84E-88205430No hitNo description
SMARTSM002341.9E-19209431IPR002913START domain
PfamPF018524.4E-32211431IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5250400IPR023393START-like domain
SuperFamilySSF559616.48E-8453661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MEIDGSGSSS NEQYASEDSN QDEKRVSHRH SPQQIQRLEA YFKECPHPDG SQRRQLCQEL  60
KLEANQIKFW FQNKRTQCKA QEERYTNMQL RGENENLQNE NKAMLEVLRN VKCPKCGGPS  120
FGKEDREPNL QKLRLENALL KEQHAQISTF VSKHLSKRPM VEEDSFSSVP SQQSFHHNSS  180
HGINPSNMFE PSSSFGPPTP PMDINLLSET AACAVEELKR LFLAEEQFWV KSSIDGTYVI  240
DSESYEKFSR CVKHFRSTSA HVESSKDVTM VPIEATTLIE MFLDSEKWKE FFPTIVNKAK  300
TIHELGSELP IRENCNVLLV MWEQLHILSP LVPPREFMIV RCCQEIQKGL WIIADVSHNV  360
GFDFVNASCY KRPSGCLIQS LPNAHSKVMW IEHVEVDHKL DSHKMYREVS SGGTGYGAKR  420
WIVTLERMCE RMALNSIQTL PASDWSDVVT TGEKRRRVMK LGGRMIQDFN GMLTMSGKVD  480
FPKQSKCGVR VSIRLNQEQG QPPGLIVSAA SSLSIPLTPS QVFDFLLKLD TRHQWDVLSY  540
GTAVSEIARI ATGSNESNCL TILRVHPMQE ESDDKSMMER DPEEGDMLML QDSYMDALGG  600
MIVYAPMDLA TMNMALSTNV EAPNIPILPS GFIISSDRRP STTEDGGTLL TVAFQILVSG  660
KTTSSIEVNE RSVNIVSALI SSTVQKIKEL LNCPPCE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453457KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2098s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642294.10.0homeobox-leucine zipper protein HDG8 isoform X1
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLR0HRS60.0R0HRS6_9BRAS; Uncharacterized protein
STRINGCagra.2098s0060.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8