PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1961s0027.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 357aa    MW: 38989.4 Da    PI: 6.355
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1961s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.99.2e-711162842154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaaskrkr 76 
                          r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla++ +k+ ++a               +    +++ 
  Cagra.1961s0027.1.p 116 RQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLASLPAKRIRDAssgggddddgdgdgdD---REDE- 201
                          7899******************************************************999999888999999987664321...2222. PP

               DUF702  77 el.......kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           +       +++  sal++t++++a+s   lets+lP+e+ss avfrc+rvss+dd++ee+aYqtav+igGhvfkGiLydqG+++
  Cagra.1961s0027.1.p 202 -KnglgddsNCAGGSALACTRVVNANS-LGLETSHLPPEISSLAVFRCMRVSSIDDEDEEYAYQTAVNIGGHVFKGILYDQGPSD 284
                          .13456666889999*********986.599***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.4E-63119283IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-27121163IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.7E-27234282IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGLFYLGGR DHNNKQDHHH HQDKDHNEDK SNNYLYLYKD EIYNNNKGFE IWPPQYFQQH  60
QQNQVAAPTN LYSFGMVPSG GSSNTNNRGT NRSLYFNVVS DHEPVRTSTG GFTVTRQGNM  120
NCQDCGNQAK KDCPHMRCRT CCKSRGFDCQ THVKSTWVPA AKRRERQAQL ASLPAKRIRD  180
ASSGGGDDDD GDGDGDDRED EKNGLGDDSN CAGGSALACT RVVNANSLGL ETSHLPPEIS  240
SLAVFRCMRV SSIDDEDEEY AYQTAVNIGG HVFKGILYDQ GPSDHHRYSS SLNAETSQHH  300
HFNLLDSTAS AAATTTVTVV NNNNGSIDPS SLYTAAAAPF NAFVAAGTPF FAPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1961s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0077970.0AC007797.7 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete sequence.
GenBankAC0246090.0AC024609.2 Arabidopsis thaliana chromosome I BAC F14P1 genomic sequence, complete sequence.
GenBankAY8005880.0AY800588.1 Arabidopsis thaliana clone H0000001145 hypothetical protein (AT1G19790) mRNA, complete cds.
GenBankAY8005890.0AY800589.1 Arabidopsis thaliana clone H0000001146 hypothetical protein (AT1G19790) mRNA, complete cds, alternatively spliced.
GenBankAY9246760.0AY924676.1 Arabidopsis thaliana hypothetical protein (At1g19790) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305185.10.0protein SHI RELATED SEQUENCE 7
RefseqXP_023632620.10.0protein SHI RELATED SEQUENCE 7
SwissprotQ9FXH70.0SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLR0IM150.0R0IM15_9BRAS; Uncharacterized protein
STRINGCagra.1961s0027.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-159SHI-related sequence 7
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]