PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1670s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 267aa    MW: 30047.3 Da    PI: 8.4863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1670s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.2e-1480132155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++ +h  +Er+RR+++ s f  Lr+llP       ++K s ++   +Av+YIk+Lq
  Cagra.1670s0006.1.p  80 KKLKHRDIERQRRQEVSSLFKSLRSLLPFqY---IQGKRSTSDHIFQAVQYIKDLQ 132
                          5789*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1576149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.04E-1377136No hitNo description
PROSITE profilePS5088814.26579131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1180132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1181148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-585137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDFVPSLFMP DSTSYEDGLL FSDSFLLSSF VSSNQNHDVR EPITNKIDHG ISKKKRSLCD  60
TYGVMSDEAN KNDVDDRETK KLKHRDIERQ RRQEVSSLFK SLRSLLPFQY IQGKRSTSDH  120
IFQAVQYIKD LQNKNKELNE KRNRIKKSIP GTNAATLPST EECTSSLSSS TTSTLSLSCS  180
CVGDKHFTVV VTPCLVGVEI IVSCCLGRNK SCLSSVLQIL AQEQKLSVVS CISTRLQQRF  240
MHTIVSQVED NKQINILELR DKIVNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1670s0006.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302694.10.0transcription factor bHLH125
SwissprotQ9LQ081e-128BH125_ARATH; Transcription factor bHLH125
TrEMBLR0GI840.0R0GI84_9BRAS; Uncharacterized protein
STRINGCagra.1670s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-99bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]