PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.16070s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family STAT
Protein Properties Length: 669aa    MW: 75713.5 Da    PI: 5.2508
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.16070s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT172.28.6e-542213391120
                  STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfei 89 
                           ldvvl+na+gqpv+kdvevvasLlyad+ l+ +k++++eapL+i+ +Gvefs  drp+kll+Gr+s+klkisqLssk+dnrL+r+kf i
  Cagra.16070s0001.1.p 221 LDVVLSNAIGQPVHKDVEVVASLLYADT-LLEAKMSETEAPLMIRDEGVEFSIDDRPIKLLNGRSSLKLKISQLSSKSDNRLLRVKFGI 308
                           8**************************9.8999******************************************************** PP

                  STAT  90 pklkkypfleavskpirCisrsrntrssslt 120
                           ++ k+ypfl+avs+pirCis s ++ s+s t
  Cagra.16070s0001.1.p 309 RNAKEYPFLQAVSNPIRCISVSPDVGSLSIT 339
                           **********************998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.01E-729167IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103381.29E-63563668No hitNo description
Gene3DG3DSA:3.30.505.104.1E-8571622IPR000980SH2 domain
SuperFamilySSF555509.56E-11572660IPR000980SH2 domain
PROSITE profilePS5000110.716574668IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAGVSAIETD RYSLLEDFNV DVEVDGEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMTLLPLTL LHEEAPDPVE KSSWTKVPCV SSKSEFPLEQ WVHVGCQVSR  120
NYMRLVIDGK IQGELFLTSL LTKNSDPECP RKISLFSVGG DGYSVEGYVT CAEALPACHH  180
VEHHYRKDPP LLLSVNNSSS VGIKLDDDGV WKAFCGENFS LDVVLSNAIG QPVHKDVEVV  240
ASLLYADTLL EAKMSETEAP LMIRDEGVEF SIDDRPIKLL NGRSSLKLKI SQLSSKSDNR  300
LLRVKFGIRN AKEYPFLQAV SNPIRCISVS PDVGSLSITP KRLTNVDRPS STESQDILHN  360
TPSVKRIRLG KESDSGSEEL YQHCNSYPQT STQFEDGNCM KLHEEYNSST DSENFEMRDT  420
ISDSTIFRYC LGNLTDKALL LKEITNNSSD DEVLKFSNQV SLYSGCSHHS YQINMARELI  480
AEGTNAWILI SRNNQHVHWD NVVYEIEEHF MRISKCSSRS LTNQDFELLR RISGSYEYIT  540
QENFEKMWCW LFPVAYSISR GWINGMWRSL SPKWVEGFIS KEEAEHSLQG QEPGTFILRF  600
PVSRIWPHPD AGSLVVSYVG HDFALHHKQL KIDNICESSG RYMDAKPLQD MLLAEPELSR  660
LGRIIRSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.16070s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300814.10.0SH2 domain-containing protein B
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLR0GD400.0R0GD40_9BRAS; Uncharacterized protein
STRINGCagra.16070s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]