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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1561s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 273aa MW: 31196.7 Da PI: 4.8105 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 1.9e-20 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k Cagra.1561s0012.1.p 69 KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 122 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 134.8 | 3e-43 | 68 | 160 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl++eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ k++++Lr+e Cagra.1561s0012.1.p 68 EKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDHLLSNYDSIVKDNDKLRSE 157 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ Cagra.1561s0012.1.p 158 VTS 160 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.28E-20 | 56 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.01 | 64 | 124 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-19 | 67 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.91E-19 | 69 | 125 | No hit | No description |
Pfam | PF00046 | 1.7E-17 | 69 | 122 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-22 | 70 | 131 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.0E-6 | 95 | 104 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.0E-6 | 104 | 120 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.9E-16 | 124 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MESNSFLFDP SASQHGNMFF LGNLNPVVQG GARSMMMMNM EETSKRRPFF SSPEDLYDEE 60 YYDDQLPEKK RRLTTEQVHL LEKSFETENK LEPERKTQLA KKLGLQPRQV AVWFQNRRAR 120 WKTKQLERDY DLLKSTYDHL LSNYDSIVKD NDKLRSEVTS LIQKLQGKEE ETTAKEPPGQ 180 VPDPNQLDPV YINPAAIKTE DRLSSGSVGS AVLDEDAPQL LDSCDSYFPS IVPIHSQQDD 240 SDHDRTCFSD VFVPTTSPSH HHGESLGLWG WP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 124 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1561s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058188 | 0.0 | AY058188.1 Arabidopsis thaliana AT3g01470/F4P13_2 mRNA, complete cds. | |||
GenBank | AY098972 | 0.0 | AY098972.1 Arabidopsis thaliana AT3g01470/F4P13_2 mRNA, complete cds. | |||
GenBank | X58821 | 0.0 | X58821.1 A.thaliana homeobox gene Athb-1 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299626.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 1e-165 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | R0HRX8 | 0.0 | R0HRX8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1561s0012.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8884 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-166 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1561s0012.1.p |
Publications ? help Back to Top | |||
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