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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.13424s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23639.6 Da PI: 6.6851 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.7e-18 | 48 | 99 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t+ ql+ Lee Fek++ + +++ LA+klgL+ +qV vWFqNrRa++k Cagra.13424s0008.1.p 48 RKLTPIQLRLLEESFEKDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYK 99 4789***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114 | 9.1e-37 | 46 | 136 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 k r+l+ q++lLEesFe++++Lep+rK la++Lgl+p qvavWFqnrRAR+ktkqlE+d+++Lk+ y +lk++ + L +++++L+++ Cagra.13424s0008.1.p 46 KTRKLTPIQLRLLEESFEKDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYKTKQLEHDCDSLKAIYAKLKTDWDILYSQNQTLKNK 134 889************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 ++ Cagra.13424s0008.1.p 135 VS 136 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.823 | 41 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-17 | 42 | 105 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 46 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.05E-15 | 46 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-19 | 48 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-15 | 48 | 99 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.7E-5 | 72 | 81 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 76 | 99 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-5 | 81 | 97 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-13 | 101 | 142 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MENSDTNDSE VFFWFHNQSH SHNNSEPNTV DEEGVCESHV LREITKTRKL TPIQLRLLEE 60 SFEKDKRLEP KRKLWLAEKL GLKPSQVAVW FQNRRARYKT KQLEHDCDSL KAIYAKLKTD 120 WDILYSQNQT LKNKVSLLKE KLRMQENLET QKLGENGISM KSYNTQYSEE EDGVGNQYSF 180 PELAVLGFYY DPTLTSSNLR L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 101 | RRARYKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.13424s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC000348 | 1e-102 | AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 1e-102 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303997.1 | 1e-139 | homeobox-leucine zipper protein ATHB-54 | ||||
Swissprot | P0CJ65 | 1e-111 | ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54 | ||||
TrEMBL | R0IF28 | 1e-137 | R0IF28_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.13424s0008.1.p | 1e-148 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15908 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27045.1 | 1e-113 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.13424s0008.1.p |