PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1004s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 293aa    MW: 31793.5 Da    PI: 6.2549
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1004s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.66e-09546439
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         r C+ +++  ++lfC+ +  +lC  C +++H        H++
  Cagra.1004s0003.1.p  5 RLCDSCKSTAATLFCRADAAFLCGPCDSKIHTAnklasrHER 46
                         78******99*********************55667777776 PP
2zf-B_box24.36.7e-084992542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e+ +++  C+ +   lC +C   +H+       H++ p+
  Cagra.1004s0003.1.p 49 LCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplssrHERLPI 92
                         6*****************************66888889998776 PP
3CCT69.11.1e-23226269144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Cagra.1004s0003.1.p 226 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 269
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.879249IPR000315B-box-type zinc finger
SMARTSM003363.2E-14249IPR000315B-box-type zinc finger
CDDcd000213.47E-8547No hitNo description
PfamPF006438.8E-7547IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9934592IPR000315B-box-type zinc finger
PfamPF006432.8E-64992IPR000315B-box-type zinc finger
CDDcd000218.42E-94992No hitNo description
SMARTSM003361.6E-105092IPR000315B-box-type zinc finger
PfamPF062031.2E-17226268IPR010402CCT domain
PROSITE profilePS5101716.658226268IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASSRLCDSC KSTAATLFCR ADAAFLCGPC DSKIHTANKL ASRHERVYLC EVCEQAPAHV  60
TCKADAAALC VTCDRDIHSA NPLSSRHERL PITPFHDAVS GSVKSASSFV NDDDDDDGEA  120
ASWLLPKEGG ETEISKFFTD LEYPKIEVTS EENSSGNDGV VPVNNKLVFL NDDYFNIEIS  180
ASKGFNFINQ SDLSRSLDVA LVPESGGGAT TVTVTTPVVQ LSPAEREARV LRYREKRKNR  240
KFEKTIRYAS RKAYAEMRPR IKGRFAKRTE SRGDDGGGDG GVYGGFGVVP SF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1004s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294708.10.0zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-155COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLR0FXZ60.0R0FXZ6_9BRAS; Uncharacterized protein
STRINGCagra.1004s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-151CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]