PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0824s0071.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family STAT
Protein Properties Length: 674aa    MW: 76339.6 Da    PI: 6.0483
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0824s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT185.85.5e-582213381117
                 STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                          ldvvl+na+gqpv+kdv+vvasLlyadsg++vek+ d+eapLL++y+Gv+f++ed+p++ll+G+asfklkisqLs  +d+rLf+ikfeip
  Cagra.0824s0071.1.p 221 LDVVLANAIGQPVHKDVKVVASLLYADSGTPVEKRTDSEAPLLVRYEGVDFTAEDKPCNLLNGCASFKLKISQLSPMSDKRLFCIKFEIP 310
                          8***************************************************************************************** PP

                 STAT  91 klkk.ypfleavskpirCisrsrntrss 117
                          ++k+ ypfle+v+++irCisr+r++ + 
  Cagra.0824s0071.1.p 311 EVKAyYPFLETVTNQIRCISRNRDSITP 338
                          ***988*****************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498996.97E-828165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103384.69E-66568672No hitNo description
SuperFamilySSF555502.85E-12576664IPR000980SH2 domain
Gene3DG3DSA:3.30.505.101.2E-8576634IPR000980SH2 domain
PROSITE profilePS5000110.123579647IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MAGDCAIDTK KYSLLEDFNV DVEVQSHDFK SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQK WVHVGCEVSR  120
NYMRLHICGE FVGEQVLTSL MTNGTNLDWA RKISLFSVGG DGYSVQGFIH CAEVLPSNVP  180
ANYHYTKDPP LWLSVDKPST SEIESDEDGV WTIVGGTFCS LDVVLANAIG QPVHKDVKVV  240
ASLLYADSGT PVEKRTDSEA PLLVRYEGVD FTAEDKPCNL LNGCASFKLK ISQLSPMSDK  300
RLFCIKFEIP EVKAYYPFLE TVTNQIRCIS RNRDSITPKR SNHINYLLNR GEKERASSNG  360
ISDIRHSSSM KRIRLGEEKV SQSEFGNGNG TSIQWKPQNH VEEDNSSTDS ENTEIKQSTG  420
FRRYTIPDSM IFRYCLANLI ERSLLLKEIT NNSSDEEVSQ FADQVSLYSG CSHHGYQIRM  480
ARKLIAEGTN AWILISRNYQ HVHWDNVVIE IEEHFMRIAK CSSRSLTHQD FELLRRICGC  540
YEYITQENFE KMWCWLFPVA SAISRGLING MWRSVSPKWI EGFVTKEEAE RSLQNQEPGT  600
FILRFPASRS WPHPDAGSLV VTYVGHDLLI HHKLLAIDHI CDSSERYTDA KPLQDMLLAE  660
PELSRLGRIV RGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0824s0071.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304512.10.0SH2 domain-containing protein A isoform X2
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLR0IGD00.0R0IGD0_9BRAS; Uncharacterized protein
STRINGCagra.0824s0071.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]