PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0635s0026.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HB-other

Protein Properties

Length: 876aa MW: 97285.7 Da PI: 9.9098

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0635s0026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.7e-06	24	80	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ ++ Cagra.0635s0026.1.p 24 KRPRDLLNPKAVKYLQAVFAVKDAISKRESREISALFGITVAQVREFFVTQKTRVRR 80 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.653	21	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-6	22	83	IPR009057	Homeodomain-like
SMART	SM00389	8.5E-5	23	85	IPR001356	Homeobox domain
CDD	cd00086	0.00128	24	81	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-4	24	83	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.7E-4	186	280	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	3.92E-5	189	282	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MIQTLLHNLI ASLAAGALSI NIGKRPRDLL NPKAVKYLQA VFAVKDAISK RESREISALF 60 GITVAQVREF FVTQKTRVRR QVRLSREKVI LSNTDALQGD GVPEDNNGTN HVDPVPLNSI 120 HPEACSISWS AAETVALIPP EDIPPDISDS DKYFVENIFA LLRKEESFSG QVKLMEWIMQ 180 IQDSSVLIWF LSKGGVLILT TWLSQAAVEE QTSVILLILK VLCHLPLHKA SPENMSAILQ 240 SVNGLRFYRT SDISNRAKGL LSRWTKLFAK IQAMKKQNRN NSQIDSQSQL LLKQSIAEIM 300 GDSSNPEDIL SLSNGRSENV RRFESSQGPK LLLTSADDST KKHMLGSTPS YNKERRKVQM 360 VEQPGQKAAG KSPQTVRIGT SSRSRPMSAD DIQKAKMRAL FMQSKNSKKD PLPSAIGDSR 420 TIVPEKPLAL ESSKDFPPSQ NNEAKTEDTY VPLAVQPVNG PAVIVKVQAD EIKKPLTPPK 480 SISSKVGILV KMSPQTILKN CKRKQIDWHV PPGMVLDEVW RVATGGNSKE ADVQRNRNRR 540 ERETTYQSLQ TIPLNPKEPW DREMDFDDTL TPEIPSQQPP DESITEPQNS LDERRTAASA 600 ATTSSSLSSP EPDLELLAAL LKNPDLVYAL TSGKPSNLAG QDMVKLLDVI KTGAPNSSSS 660 SNKQSEEKVE VSLPSPTPST NPGMSGWGQE AIRNPFSRQK QVGAPVARLV TQHHVTNSMQ 720 WQSTNEQAIP RHATAAYNNS LILPHTERQQ QQHMQPQLHH NHHLQQQPMS TTSYGVREPV 780 GQMGTATLGS WRLQQSQNSY YSHQANDVAS VSQSSSYQGN NQYMSSSNPG YESWSPDHSP 840 SRNHPNIRGG QQQQQPSRKH DSSSHPYWNQ NKRWR*

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MIQTLLHNLI ASLAAGALSI NIGKRPRDLL NPKAVKYLQA VFAVKDAISK RESREISALF  60
GITVAQVREF FVTQKTRVRR QVRLSREKVI LSNTDALQGD GVPEDNNGTN HVDPVPLNSI  120
HPEACSISWS AAETVALIPP EDIPPDISDS DKYFVENIFA LLRKEESFSG QVKLMEWIMQ  180
IQDSSVLIWF LSKGGVLILT TWLSQAAVEE QTSVILLILK VLCHLPLHKA SPENMSAILQ  240
SVNGLRFYRT SDISNRAKGL LSRWTKLFAK IQAMKKQNRN NSQIDSQSQL LLKQSIAEIM  300
GDSSNPEDIL SLSNGRSENV RRFESSQGPK LLLTSADDST KKHMLGSTPS YNKERRKVQM  360
VEQPGQKAAG KSPQTVRIGT SSRSRPMSAD DIQKAKMRAL FMQSKNSKKD PLPSAIGDSR  420
TIVPEKPLAL ESSKDFPPSQ NNEAKTEDTY VPLAVQPVNG PAVIVKVQAD EIKKPLTPPK  480
SISSKVGILV KMSPQTILKN CKRKQIDWHV PPGMVLDEVW RVATGGNSKE ADVQRNRNRR  540
ERETTYQSLQ TIPLNPKEPW DREMDFDDTL TPEIPSQQPP DESITEPQNS LDERRTAASA  600
ATTSSSLSSP EPDLELLAAL LKNPDLVYAL TSGKPSNLAG QDMVKLLDVI KTGAPNSSSS  660
SNKQSEEKVE VSLPSPTPST NPGMSGWGQE AIRNPFSRQK QVGAPVARLV TQHHVTNSMQ  720
WQSTNEQAIP RHATAAYNNS LILPHTERQQ QQHMQPQLHH NHHLQQQPMS TTSYGVREPV  780
GQMGTATLGS WRLQQSQNSY YSHQANDVAS VSQSSSYQGN NQYMSSSNPG YESWSPDHSP  840
SRNHPNIRGG QQQQQPSRKH DSSSHPYWNQ NKRWR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0635s0026.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636982.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	R0H024	0.0	R0H024_9BRAS; Uncharacterized protein
STRING	Cagra.0635s0026.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Cagra.0635s0026.1.p

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]