PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0352s0025.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 772aa    MW: 84827 Da    PI: 5.3509
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0352s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.77.3e-1791146156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++  ++++ q++ + ++++++++p++++r+eLA +l+Lt +q+k+WFqN+R++ k
  Cagra.0352s0025.1.p  91 KKRYNRHSPFQIKGMDTFYKECPHPDEKQRRELAYQLDLTPAQIKFWFQNKRTQIK 146
                          5677889*********************************************9988 PP
2START158.84.2e-502985191206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+++a+++ep+W+  +      ++ de+++ f+++ +     +++ea+r++g+v+m + + ve l+d+   W++++     
  Cagra.0352s0025.1.p 298 ELAVRAMNELMLMAQVAEPLWTGGVngtsLHLDLDEYTRMFQKGLGpkvsgYRTEASRVTGLVPMIPINIVEMLMDSD-MWSTMFVgmin 386
                          57899*****************999998778999999999977666999*****************************.******99999 PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a t+e+i ++      g+lq m+ae+q+ splv+ R ++f+Ry++q+g+  w++vd S+d+  ++       R++++pSg+li++ +ng
  Cagra.0352s0025.1.p 387 RAITHEQIPTDvsgsynGVLQIMSAEYQVFSPLVStRQSYFARYCKQQGDNLWAVVDFSIDHFLPNIH----LRCRRRPSGCLIQEIPNG 472
                          *****************************************************************985....****************** PP

                          EEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwve+v++++r   +++++++++sg+a++a++wvat++rqce+
  Cagra.0352s0025.1.p 473 YSKVTWVENVEVDDRDAeQNMFKHFIRSGQAFAANRWVATMERQCER 519
                          ****************999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1783152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-1884152IPR009057Homeodomain-like
PROSITE profilePS5007115.43588148IPR001356Homeobox domain
SMARTSM003891.6E-1589152IPR001356Homeobox domain
CDDcd000862.22E-1590149No hitNo description
PfamPF000462.5E-1491146IPR001356Homeobox domain
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084839.795289522IPR002913START domain
SuperFamilySSF559612.5E-31290521No hitNo description
CDDcd088754.22E-106293518No hitNo description
PfamPF018523.7E-42298519IPR002913START domain
SMARTSM002343.8E-42298519IPR002913START domain
Gene3DG3DSA:3.30.530.204.1E-5355483IPR023393START-like domain
SuperFamilySSF559615.5E-12575757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048825Biological Processcotyledon development
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MSEPNMNNEN NDMNMYTDAG LNNTNGGADH VGGADAEGAN VGGAGVEGAG GVGADVEGAG  60
GVGAQEMDNV NTVRQDREEA RGSNESPPRK KKRYNRHSPF QIKGMDTFYK ECPHPDEKQR  120
RELAYQLDLT PAQIKFWFQN KRTQIKNHQE RIENTELRKS NNNLRDQNIG LREAVLIAVC  180
PKCGGPTAIG DMCFEEHHLR NQNARLQEEI NQLSALASSF ANKQVTMTKA ISPPTPLPPL  240
PPLPSLPPLT PLPPHRPFEF EAGSSSSTTQ RDLYGSDGNL SMEIITGPAE ADKPMIIELA  300
VRAMNELMLM AQVAEPLWTG GVNGTSLHLD LDEYTRMFQK GLGPKVSGYR TEASRVTGLV  360
PMIPINIVEM LMDSDMWSTM FVGMINRAIT HEQIPTDVSG SYNGVLQIMS AEYQVFSPLV  420
STRQSYFARY CKQQGDNLWA VVDFSIDHFL PNIHLRCRRR PSGCLIQEIP NGYSKVTWVE  480
NVEVDDRDAE QNMFKHFIRS GQAFAANRWV ATMERQCERI ASIITTKFQS VDSADHLVLT  540
DHGKKSILQL VERIARGFFI GLKNSMGTTF SGVAGDDIRV MTMKNMNDPG RPPGSVLAAA  600
SSFWVPVPPK TVFDFLRNEQ NRPQWDVLFT GGNAQKIVEI ANGRDSRNCA SLLRNANTFQ  660
NNMMVIQETT TDPTASFVIY APVETEAVEA VLNGGGDPDA VALLPCGFAI LPDGTVQPGG  720
NAGGSLLTVA YQMLLETVPT DKLSVSSVAT VENLIRSTVM NIKELFPYQN P*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0352s0025.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296541.10.0homeobox-leucine zipper protein HDG3
SwissprotQ9ZV650.0HDG3_ARATH; Homeobox-leucine zipper protein HDG3
TrEMBLR0HIB70.0R0HIB7_9BRAS; Uncharacterized protein
STRINGCagra.0352s0025.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32370.10.0homeodomain GLABROUS 3
Publications ? help Back to Top
  1. Burkart-Waco D,Ngo K,Lieberman M,Comai L
    Perturbation of parentally biased gene expression during interspecific hybridization.
    PLoS ONE, 2015. 10(2): p. e0117293
    [PMID:25719202]