PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0301s0032.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 419aa    MW: 46281.5 Da    PI: 6.9106
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0301s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.7e-06846537
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                          C+ ++e  + lfC+ ++  lC  C ++ H+       H
  Cagra.0301s0032.1.p  8 ACDFCGERTAVLFCRADSAKLCLPCDQHVHSAnllsrkH 46
                         6******99*******************99555565556 PP
2zf-B_box23.11.6e-074991339
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          ++C+++++++++  C++++  lC++C    H +      H++
  Cagra.0301s0032.1.p 49 SQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGScssaaaHER 91
                         689************************9988844667777765 PP
3CCT652.3e-22373416144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+ktR+++K+irYe+RKa+Ae+R RvKGrFvk++
  Cagra.0301s0032.1.p 373 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKAT 416
                          899***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741451IPR000315B-box-type zinc finger
SMARTSM003361.3E-12451IPR000315B-box-type zinc finger
CDDcd000216.41E-9739No hitNo description
PROSITE profilePS501199.34794IPR000315B-box-type zinc finger
CDDcd000218.80E-75180No hitNo description
SMARTSM003361.65294IPR000315B-box-type zinc finger
PfamPF062031.2E-16373415IPR010402CCT domain
PROSITE profilePS5101714.852373415IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGSSTTVACD FCGERTAVLF CRADSAKLCL PCDQHVHSAN LLSRKHVRSQ ICDNCSKEPV  60
SVRCFTDNLV LCQECDWDVH GSCSSAAAHE RSAVEGFSGC PCVSELAAVW GIDLDGKKKE  120
EEREEERLTE NFGMALDSWV SGSNIVQDLI VPYDTPMKKQ SFSLGRSKQV VYRQLEELLK  180
RDFVSCEGDG DGDGDGDGGG EIMIREGING GSNMSQLSPT TSFTSLLLST EYQSSCGNAA  240
TQWNAASHTT DQKAHNTQIW DFNLGKSRNP EEPSPVEPKG STFTLNNVTH IKNDTTNVKA  300
LRDSYQDDCI RSSSTKGQEI SKSNNVPAAI HSHKSSNNSS DLHFTEHVVI PSTKTTRLVA  360
ATNADLERMA QNRDNAMQRY KEKKKTRRYD KTIRYETRKA RAETRLRVKG RFVKATDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0301s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294300.10.0zinc finger protein CONSTANS-LIKE 14 isoform X2
SwissprotO228000.0COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLR0HT150.0R0HT15_9BRAS; Uncharacterized protein
STRINGCagra.0301s0032.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.20.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]