PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g17060

Common Name

GSCOC_T00038262001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 977aa MW: 109349 Da PI: 6.0032

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g17060	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.7	1e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ++e ++rwlk+ e++ iL+n+e+ +t++++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+ Cc11_g17060 12 VREaQSRWLKPAEVLFILQNHENQMITNQPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPNFQRRS 109 45669******************************************************************************************* PP CG-1 99 ywlLeeelekivlvhyle 116 yw+L+ ++e+ivlvhy++ Cc11_g17060 110 YWMLNPAYEHIVLVHYRD 127 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.048	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.7E-75	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.3E-47	14	127	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	5.0E-8	410	493	IPR002909	IPT domain
Gene3D	G3DSA:2.60.40.10	1.4E-8	410	499	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	8.4E-19	410	494	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.8E-15	605	701	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.955	607	699	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-16	609	701	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.2E-8	627	700	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.15E-8	628	699	No hit	No description
PROSITE profile	PS50088	11.22	640	672	IPR002110	Ankyrin repeat
SMART	SM00248	4.0E-4	640	669	IPR002110	Ankyrin repeat
SMART	SM00015	20	757	779	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.712	758	787	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.5	818	840	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.89E-5	819	866	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.584	819	848	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.02	821	839	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0032	841	863	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.736	843	867	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.4E-5	844	863	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI 120 VLVHYRDISE ARNNAGTISQ FSPISSSTFS QSPISGNTQQ LGSSPLLGES YEQIHNLSSP 180 GSVEFSSSVV IKSNGMNYSQ DIERTEEVTS SSSHDISQAL RRLEEQLSLN DDRLEEIGNC 240 YTQNENSHDS EKSTQGQTPS VPGQGYEIEH QQQSLGHEGW TEMLDGCNSS EDVLAQVRHV 300 DKFDRNVRMN NHYEHSSSAC VGVLLDEWTK ELVAEQDGYT WLDYGGTNAQ DVSLPVAKEV 360 QNLAYPAYSA AVKTYMTNPD NYTTLFDHNQ IGISLEEDLG LTIAQKQKFT IQEISPEWAY 420 ASETTKVFII GSFLCDPLDA AWTCMFGDIE VPVQIIQEGV ICCHAPHHSP GNVTICVTSG 480 NRESCSEVRE FEYRVKPTVC SHCSQPQREA SRSPEEMLLL VRFVQLLLSN PSMQKGDTSE 540 SGVDLLGKSR ADEDSWGQVI EALLAGTSTL SITTDWLLEE LVKDKLQNWL SSKSQDDNMP 600 CCSLSKKEQG VIHIISGLGF EWALHPFLKS GVNVNFRDIN GWTALHWAAR FGREKMVAAL 660 IAAGASAGAV TDPNSKDPTG KTAASVAATW GHKGLAGYLS EVALTSHLFS LTLEESELSK 720 GSADVEAERT LINIPKTSPT TNEDQLSLKD SLAAARNAAQ AAARIQSAFR AHSFRRRQQK 780 EFDISAASST SRDEYGILLS DIPELSAASK FAFRNSRDYN SAALSIQKKY RGWKGRKDFL 840 AFRQKVVKIQ AHVRGYQVRK NYRVCWAVGI LEKVVLRWRR RGVGLRGFRL ETDAIDESED 900 EDILRVFRKQ KVDATIDEAV SRVLSMVESP GARQQYRRIL EKYRQAKAEL DGAEREISST 960 SYDVSSMEND DIYQFV*

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI  120
VLVHYRDISE ARNNAGTISQ FSPISSSTFS QSPISGNTQQ LGSSPLLGES YEQIHNLSSP  180
GSVEFSSSVV IKSNGMNYSQ DIERTEEVTS SSSHDISQAL RRLEEQLSLN DDRLEEIGNC  240
YTQNENSHDS EKSTQGQTPS VPGQGYEIEH QQQSLGHEGW TEMLDGCNSS EDVLAQVRHV  300
DKFDRNVRMN NHYEHSSSAC VGVLLDEWTK ELVAEQDGYT WLDYGGTNAQ DVSLPVAKEV  360
QNLAYPAYSA AVKTYMTNPD NYTTLFDHNQ IGISLEEDLG LTIAQKQKFT IQEISPEWAY  420
ASETTKVFII GSFLCDPLDA AWTCMFGDIE VPVQIIQEGV ICCHAPHHSP GNVTICVTSG  480
NRESCSEVRE FEYRVKPTVC SHCSQPQREA SRSPEEMLLL VRFVQLLLSN PSMQKGDTSE  540
SGVDLLGKSR ADEDSWGQVI EALLAGTSTL SITTDWLLEE LVKDKLQNWL SSKSQDDNMP  600
CCSLSKKEQG VIHIISGLGF EWALHPFLKS GVNVNFRDIN GWTALHWAAR FGREKMVAAL  660
IAAGASAGAV TDPNSKDPTG KTAASVAATW GHKGLAGYLS EVALTSHLFS LTLEESELSK  720
GSADVEAERT LINIPKTSPT TNEDQLSLKD SLAAARNAAQ AAARIQSAFR AHSFRRRQQK  780
EFDISAASST SRDEYGILLS DIPELSAASK FAFRNSRDYN SAALSIQKKY RGWKGRKDFL  840
AFRQKVVKIQ AHVRGYQVRK NYRVCWAVGI LEKVVLRWRR RGVGLRGFRL ETDAIDESED  900
EDILRVFRKQ KVDATIDEAV SRVLSMVESP GARQQYRRIL EKYRQAKAEL DGAEREISST  960
SYDVSSMEND DIYQFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027151348.1	0.0	calmodulin-binding transcription activator 4 isoform X2
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A068UXT9	0.0	A0A068UXT9_COFCA; Uncharacterized protein
STRING	XP_009617256.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]