PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g16400

Common Name

GSCOC_T00035601001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 995aa MW: 108333 Da PI: 5.4092

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g16400	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.5e-29	596	647	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Cc08_g16400 596 AEKTISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 647 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-21	899	985	No hit	No description
PROSITE profile	PS51745	22.345	900	982	IPR000270	PB1 domain
Pfam	PF00564	2.5E-16	900	981	IPR000270	PB1 domain
SMART	SM00666	1.2E-23	900	982	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.9E-24	900	981	No hit	No description
CDD	cd06407	5.49E-34	901	981	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MGEPEEPDKN IARHKKSEGL LTSPAQPPDR DSLIMDLDLD FDASWSFDNF FSAVASSSAS 60 PFLLSTSDHP CSPLWAFSDG SNNNEDKAPV NTAPLSDFSK ILPCNTDLIT ENICGNADKR 120 KPTSSTLELA PLDYPDGYCT IKEKMTQALR FLKDSTEQHV LAQVWVPVKN GGRCVLTTSG 180 QPFVLDPKTN GLYQYRMVSA MYMFSVDGET DGDLGLPGRV FRQKLPEWTP NVQYYSSKEY 240 TRLNHALHYN VRGTLALPVF EPSGQNCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS 300 SEVLDQPMIQ VCNEDRQNAL TEILGILTEI CETHKLPLAQ TWVPCRHRSV LANGGGLRKT 360 CSSFDGSCMG QICMSTTDVA FYVVDAHIWG FREACAEHHL QKGQGVAGRA FAFHNLCFCE 420 DVTQFCKTEY PLVHYARMFG LSSCFAICLR STHTGDDDYV LEFFLPPSIR DHTGQRALLD 480 SLLVTMKQHL GSLRIASGNE LQQDWRSVEI VKSLVGEKLD SGPKLFQASK PATTSTALTV 540 PEMLQLDSIE LQRPTLGDNC ANDVAHGSGA ARVQNAVSIA ENKDTGKKTE RKRGKAEKTI 600 SLDVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LSKLKRVIES 660 VQGAEGAFTL TSLATSSLPV AVGSACRPSS SSEPHQLGHP GSAPSHDFSG DKNESSLPNG 720 FEHDEKAETS NELPGGRIGE DGFLPGEGSH RSKIGGGSRE ESAGTPTSHG SCQGSPCIRN 780 GSSPLNELVV SPSLEQNMRV GGSVGFTCQP MGEMNLSAGF SADAFVSVEP QEPFGGMLIE 840 DAGSSHDLQK LCSAAEALFD ERVPEYSWND PPCSAGIPKE STAVATERMP GFSAKLELKT 900 ITIKATYRED IIRFRLPLDS GIDRLKEEIA KRLKLELGTF EIKYLDDDNE WVLIACDADL 960 QECADVSISA ASNLIRLVVH DLMPLLGSSC ESSA*

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MGEPEEPDKN IARHKKSEGL LTSPAQPPDR DSLIMDLDLD FDASWSFDNF FSAVASSSAS  60
PFLLSTSDHP CSPLWAFSDG SNNNEDKAPV NTAPLSDFSK ILPCNTDLIT ENICGNADKR  120
KPTSSTLELA PLDYPDGYCT IKEKMTQALR FLKDSTEQHV LAQVWVPVKN GGRCVLTTSG  180
QPFVLDPKTN GLYQYRMVSA MYMFSVDGET DGDLGLPGRV FRQKLPEWTP NVQYYSSKEY  240
TRLNHALHYN VRGTLALPVF EPSGQNCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS  300
SEVLDQPMIQ VCNEDRQNAL TEILGILTEI CETHKLPLAQ TWVPCRHRSV LANGGGLRKT  360
CSSFDGSCMG QICMSTTDVA FYVVDAHIWG FREACAEHHL QKGQGVAGRA FAFHNLCFCE  420
DVTQFCKTEY PLVHYARMFG LSSCFAICLR STHTGDDDYV LEFFLPPSIR DHTGQRALLD  480
SLLVTMKQHL GSLRIASGNE LQQDWRSVEI VKSLVGEKLD SGPKLFQASK PATTSTALTV  540
PEMLQLDSIE LQRPTLGDNC ANDVAHGSGA ARVQNAVSIA ENKDTGKKTE RKRGKAEKTI  600
SLDVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LSKLKRVIES  660
VQGAEGAFTL TSLATSSLPV AVGSACRPSS SSEPHQLGHP GSAPSHDFSG DKNESSLPNG  720
FEHDEKAETS NELPGGRIGE DGFLPGEGSH RSKIGGGSRE ESAGTPTSHG SCQGSPCIRN  780
GSSPLNELVV SPSLEQNMRV GGSVGFTCQP MGEMNLSAGF SADAFVSVEP QEPFGGMLIE  840
DAGSSHDLQK LCSAAEALFD ERVPEYSWND PPCSAGIPKE STAVATERMP GFSAKLELKT  900
ITIKATYRED IIRFRLPLDS GIDRLKEEIA KRLKLELGTF EIKYLDDDNE WVLIACDADL  960
QECADVSISA ASNLIRLVVH DLMPLLGSSC ESSA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027085451.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A068UUL3	0.0	A0A068UUL3_COFCA; Uncharacterized protein
STRING	XP_009605047.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]