PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g15980
Common NameGSCOC_T00035545001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 311aa    MW: 34114.4 Da    PI: 9.3929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g15980genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19108158256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Cc08_g15980 108 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 158
                  59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.23E-17107167No hitNo description
Gene3DG3DSA:3.30.730.108.1E-31108166IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22108166IPR016177DNA-binding domain
SMARTSM003802.1E-36108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.301108165IPR001471AP2/ERF domain
PfamPF008473.0E-13109158IPR001471AP2/ERF domain
PRINTSPR003673.8E-10109120IPR001471AP2/ERF domain
PRINTSPR003673.8E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGVQENTVP LAFEDGASIR SSLSHLILTG GANTLDSILS YGQQPNPVAD SVFEPLGSSV  60
YLKQRDLLHK FYEENKGNSS AVSRIRLTNP LQNSVYAQSF MHPCKKKLYR GVRQRHWGKW  120
VAEIRLPQNR MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLRDP SKLGFGDGAR  180
LNALKNAVDA KIQAICQKVK RERANKNAKK SSGGSGDATK VKESKKEMKI LDTSSSSSSL  240
PPLGNDNSWS SELVSPTPSV SEDGIWKGEN SSTSISGEFP VGPMGSEFED CSLARFPSFD  300
PDLIWEVLAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19107165160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19104165163ATERF1
3gcc_A2e-19104165163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084020.10.0ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A068UWZ50.0A0A068UWZ5_COFCA; Uncharacterized protein
STRINGXP_006439361.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-66ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]