PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g11350
Common NameGSCOC_T00037012001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 651aa    MW: 73978.9 Da    PI: 7.2182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g11350genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08461502240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE ell ++ +++++g   +W+ I++++g+gR+ +++
      Cc07_g11350 461 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 502
                      69***********************************99876 PP
2Myb_DNA-binding25.62.8e-08593637345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
      Cc07_g11350 593 VWSAVQERALVQALKTFPKEtnqRWERVAAAVP-GKTVVQCKKKFA 637
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006253.1E-783101IPR001623DnaJ domain
SuperFamilySSF465654.06E-2096177IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.6E-2096198IPR001623DnaJ domain
SMARTSM002717.7E-1498173IPR001623DnaJ domain
CDDcd062574.40E-1299170IPR001623DnaJ domain
PROSITE profilePS5007618.27399181IPR001623DnaJ domain
PfamPF002261.1E-1699178IPR001623DnaJ domain
PRINTSPR006253.1E-7122137IPR001623DnaJ domain
PRINTSPR006253.1E-7153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS512937.63458513IPR017884SANT domain
SMARTSM007171.1E-6459512IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-8461504IPR009057Homeodomain-like
PfamPF002492.5E-7461502IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-5461502IPR009057Homeodomain-like
CDDcd001672.26E-5462502No hitNo description
PROSITE profilePS512939.034589644IPR017884SANT domain
SMARTSM007174.1E-9590642IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-9592647IPR009057Homeodomain-like
PfamPF002491.3E-6593636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-4594637IPR009057Homeodomain-like
CDDcd001679.87E-6594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MAATSSMRLI SYAEEIIDGQ AVYVSSNSSP VKAFNFEPAG HAFHSAALRL SGVLEDDDND  60
NDDEKSDTTS DKDQSYTQTS ESYSTKGKKK SGSGEKQQDH YALLGLGHLR YLATEDQIRR  120
SYREAALRHH PDKQAALLLA EETEAAKQAK KDEIENHFKA IQEAYEVLID PTRRRIYDST  180
DEFDDEIPTD CAPQDFFKVF GPAFLRNGRW SVSQPIPSLG DETTPLKEVD NFYNFWYSFK  240
SWREFPHADE FDLEQAESRD HRRWMERQNA KLSEKARKEE SARIRALVDN AYKRDPRILR  300
RKEEEKAEKQ RKKEAKILAK KLQEEEAARI AEEERLRKEE EDKRAAEAAL HQKKAREKEK  360
KLLRKERTRL RTLLAPLLSC DLLEEDVEKL CMSLDMEHLR NLCNKIEENE DVQRVKIVKD  420
ALGHGHNLKD EKEDVKGALR NGAALEANGQ FPLGTKEKIE KPWSKEEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA PSIASPLTTR  540
EEVGGVSNGN ASQKHAGKPD NLQDSSSQTA NQQNSDVAVS AENGVSSTGD QDVWSAVQER  600
ALVQALKTFP KETNQRWERV AAAVPGKTVV QCKKKFALLK ESFRNKKSAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1919529820123Zuotin
5dje_B2e-1919529820123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076507.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_027078876.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_027178881.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A068U0Y80.0A0A068U0Y8_COFCA; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain