PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g06840
Common NameGSCOC_T00042199001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 494aa    MW: 55226.7 Da    PI: 5.5543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g06840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19249299256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Cc05_g06840 249 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 299
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-33248308No hitNo description
SMARTSM003801.4E-39249312IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22249307IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-32249307IPR001471AP2/ERF domain
PROSITE profilePS5103222.932249306IPR001471AP2/ERF domain
PRINTSPR003671.1E-10250261IPR001471AP2/ERF domain
PfamPF008472.7E-12250299IPR001471AP2/ERF domain
PRINTSPR003671.1E-10272288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MNIFVSMASP KNSGKSKKYV EESQHLAGME WDRDRRGQGI REFDLSLERQ QQWRPVFDEA  60
SMENRPFKKI KSPERQDPFH QSSSSLAQQT SQPSLSLTPP YDSRGSNPLA FPSPSPSSSS  120
SRHVFPFAFD GTQQSLESLQ HLRAHTFDRN QQNTVPLFHP LQQNEQQMIS FAPHYHHHQQ  180
QQQQGFAFPP YFAGDAAAGS QHQQQQLLQY WSDALSPRGR MMMMNRLGQG QDPRTLFRPP  240
IQPINTTKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEDAALAYD REAFKLRGEN  300
ARLNFPELFL GKEKAESSSV AGPDSSASDP PTPHDNSASR SGDQPQQPDQ APEGLNMDVY  360
IPELPAAALM GDNPDDDSGL GSSEVTASDE VPAFAESSSA AAEGALHPQS SELVWGEMAD  420
AWFNSIPAGW GPGSPVWDDL DSSNNLMLPP DLPFVNLHQQ SSHDSDSQRQ LDNAASSSST  480
SYPVRPFFWK DRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20248306463ATERF1
3gcc_A4e-20248306463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323103e-44EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063932.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A068V2H90.0A0A068V2H9_COFCA; Uncharacterized protein
STRINGEOX993821e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-48ERF family protein