PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g10560
Common NameGSCOC_T00042612001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 385aa    MW: 42448 Da    PI: 7.2866
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g10560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-117396427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                 e C ++++tG Ck+G +CkF+H+p
  Cc04_g10560 73 EDCAYYMKTGSCKFGMNCKFNHPP 96
                 79********************97 PP
2zf-CCCH29.41.3e-09119143327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C++++ +G Ck+G+ Ck++H++
  Cc04_g10560 119 QTECKYYLTSGGCKFGSACKYNHSR 143
                  568********************95 PP
3zf-CCCH42.88.6e-14164188226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C++++rtG CkyG++CkF+H+
  Cc04_g10560 164 GEKECPYYMRTGSCKYGSNCKFNHP 188
                  7899********************9 PP
4zf-CCCH30.65.6e-10289315127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++f++tG Cky ++C+F+H++
  Cc04_g10560 289 PGQPDCSYFLKTGDCKYKANCRFNHPK 315
                  5789*********************96 PP
5zf-CCCH375.6e-12336361227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+f+ r+G+Ck+G+ CkF H++
  Cc04_g10560 336 DQSICSFYNRYGICKFGPACKFDHPE 361
                  6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-66998IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8646997IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-46996IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-97396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-57595IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183116144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6119145IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7119143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5122144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474162190IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-7162189IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-11164188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7164189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6168187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826288316IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5288315IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5293315IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5334361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103334362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5335362IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9336361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4338361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGTNGEEFWE GGSDVQRGRG VDVDELFQGR YGNDDVGGEV EGEENYGTEE ASGYSGDRTY  60
NRRFEYPLRL DAEDCAYYMK TGSCKFGMNC KFNHPPKRRN QGTRDKAKPR VEDSERLGQT  120
ECKYYLTSGG CKFGSACKYN HSREKSALAP VVEFNFLGLP IRPGEKECPY YMRTGSCKYG  180
SNCKFNHPDP TSVAGNDHAS GFVAGGSAQL HGAAQPSASS WSSASMIFPP AQGMPSNAEW  240
NGYQATVYPT SERSLPTPPA FAMNNPVSET NFYAPLQQQM PVDEYPQRPG QPDCSYFLKT  300
GDCKYKANCR FNHPKFQSSK STSCALSDKG LPLRPDQSIC SFYNRYGICK FGPACKFDHP  360
ENWGKSVASG GVRMARNEME AGFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123005.10.0zinc finger CCCH domain-containing protein 67 isoform X2
RefseqXP_027168674.10.0zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ9STM41e-110C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A068V5970.0A0A068V597_COFCA; Uncharacterized protein
STRINGXP_009791086.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-107C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]