PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g04130
Common NameGSCOC_T00026122001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CPP
Protein Properties Length: 736aa    MW: 80423.2 Da    PI: 6.5016
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g04130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.25e-16440477340
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Cc03_g04130 440 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKP 477
                  89**********************************96 PP
2TCR51.22.5e-16522560139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Cc03_g04130 522 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 560
                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-16438479IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.721439562IPR005172CRC domain
PfamPF036381.2E-11441476IPR005172CRC domain
SMARTSM011147.5E-18522563IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.1E-12524560IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MDTPERSKNQ INTPISKFEE SPVFSFLNNL SPIQPVKSVH ITQTLNALSF SSLPSVFTSP  60
HASSLKESRF LRRHQLVDPS RPEFSSDSEK KIDGNGGIVK YAHNSSEQQE NFDPGNSLGE  120
TSIEPSYDCS QLAVEFVRSL NYDCKSPISS PKASCAASNK GCDWESLISD AADLLNFDTP  180
KDVDSFNESP RSTTAFYTNN TNNIQNMQTF GCIEHQGEGM DNENPSTQPG EGSCVMEFAE  240
PEEVITSSSL NSECMEGSLS QKMDAEPVSN LYRGMRRRCL VFEMAGARRK HLEENSGSVS  300
SILLQSDGNT PSADKQLVPF KSGNDSSRCI LPGIGLHLNA LATTPKEFKV VKQDASVAGR  360
LVIAPSSTAN FQPIMAGQES FNESLALTST ETDMDPTENA APLTEDANQL SALIANEEFN  420
QISPKKKRRR LEVSGEPEGC KRCNCKKSKC LKLYCECFAA GVYCVEPCSC QECFNKPIHE  480
DTVLATRKQI ESRNPLAFAP KVIRSSDSLT EDDSSKTPAS ARHKRGCNCK KSGCLKKYCE  540
CYQGGVGCSI NCRCEGCKNA FGRKDGSIYI GTEAELEEDE TDALEKTVKD RKPHKTAIQV  600
DVEQQNPESA PPATPLRFGR PSVQLPFSSK KKPPRSSLPS IGSSSGLYPI QGLAKPNLLH  660
PQPKFDKHFQ TVQEDELPEI LQGNGSPIGG IKLASPNSKR VSPPHCDFEM SPGRRSSRKL  720
ILQSIPAFPS LTPKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1844355914120Protein lin-54 homolog
5fd3_B3e-1844355914120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423430PKKKRRRL
2424429KKKRRR
3426430KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116329.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A068TT160.0A0A068TT16_COFCA; Uncharacterized protein
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-159TESMIN/TSO1-like CXC 2