PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g20430
Common NameGSCOC_T00015935001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 450aa    MW: 48640 Da    PI: 8.7204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g20430genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-105275427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                  +C +++rtG C yG++C+++H++
  Cc01_g20430 52 LECAYYMRTGVCGYGAKCRYNHPR 75
                 58********************96 PP
2zf-CCCH39.68.9e-1397121327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtGtCk+G++CkF+H++
  Cc01_g20430  97 EPDCQYYLRTGTCKFGASCKFHHPR 121
                  789********************96 PP
3zf-CCCH38.22.4e-12143167327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++tG+Ck+G++CkF+H++
  Cc01_g20430 143 EKECSYYLKTGQCKFGNTCKFHHPQ 167
                  689********************97 PP
4zf-CCCH37.73.5e-12292318127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++r+G Ck+G++C+F+H+p
  Cc01_g20430 292 PGQPECQYYMRYGDCKFGPSCRFHHPP 318
                  5789*********************97 PP
5zf-CCCH26.31.3e-08340364327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +  C+f+++ G+Ck+G +CkF H++
  Cc01_g20430 340 MQSCPFYLQKGHCKFGRNCKFDHPM 364
                  567********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.6E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7184876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65177IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-85275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.31994122IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-694121IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-1097121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.18E-699122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5100121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878140168IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5140167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6141168IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4146166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211291319IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6291318IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5295318IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615337365IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6339364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6339366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4343362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MELYGRSNAR KGLQQNRSRE WAPAAREAGL TESTGRLGLW DGEAYPERPG MLECAYYMRT  60
GVCGYGAKCR YNHPRDRASV GGSVSLAAAD YPERVGEPDC QYYLRTGTCK FGASCKFHHP  120
RNAGGSLISV SLNIYGYPLR LGEKECSYYL KTGQCKFGNT CKFHHPQPAG MSMPATAHPF  180
YPTVQSPSAL SEQYCCASTN YRVSRPPILT GSYVPGAYGP FLLHTGVVPV PNWGPYTGPI  240
TPGFSPGTQA SVGATSLYGV SQLNSSATAF AGTYPTLLSD SNQKKQKFPE RPGQPECQYY  300
MRYGDCKFGP SCRFHHPPNL VVAKAYSALS PLGLPLRPGM QSCPFYLQKG HCKFGRNCKF  360
DHPMGTVEYS PSASSLTDVP VTPYMLCSST AMEGQAAEFV GSKLDLQITR DRPHGSSLSG  420
SVGLTFSRAA PFLLSNIQIS DQGSGPNAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116904.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-170C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A068U7E00.0A0A068U7E0_COFCA; Uncharacterized protein
STRINGXP_009776613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-168C3H family protein