PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033431m
Common NameCICLE_v10033431mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 482aa    MW: 53662.1 Da    PI: 7.3618
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033431mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.41.9e-051446335
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                        C+ ++++ + l+C+ ++  lC  C  + H+
  Ciclev10033431m 14 SVPCDFCSDQIAVLYCRADSAKLCLFCDHHVHS 46
                     568**************************9995 PP
2zf-B_box28.53.2e-0957102342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+++ ++++++ C +++  lC++C    H +      H++vp+
  Ciclev10033431m  57 SQICDNCRSEPVTFRCATDNLVLCQECDWDAHGScsvsaaHDRVPI 102
                      579**************************99*55999999999987 PP
3CCT64.82.5e-22433476144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Ciclev10033431m 433 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAS 476
                      7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.4561259IPR000315B-box-type zinc finger
SMARTSM003362.1E-101259IPR000315B-box-type zinc finger
CDDcd000214.61E-51547No hitNo description
PROSITE profilePS5011910.69455102IPR000315B-box-type zinc finger
PfamPF006431.6E-658102IPR000315B-box-type zinc finger
CDDcd000216.52E-959102No hitNo description
SMARTSM003360.2160102IPR000315B-box-type zinc finger
PfamPF062031.9E-16433475IPR010402CCT domain
PROSITE profilePS5101714.912433475IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDMVSPQSDR NKESVPCDFC SDQIAVLYCR ADSAKLCLFC DHHVHSANLL SKKHIRSQIC  60
DNCRSEPVTF RCATDNLVLC QECDWDAHGS CSVSAAHDRV PIEGFSGCPS ALELASMWNF  120
DLQGKKLNET ASFGEYWNGS QDFESLWMYK ANGIMNSQDL TVPNEKGFFF NGDLMSCMSK  180
RQGQSQSPSC GKLKQVIHKQ LVELLKTNSM VNENGNKIIN NNDSNNDNNI SMNNSVGGRG  240
ENLVPTTRMN ELGNGVEQQA PFTSLLMMQR QFGSKECDRV GDEGMFWDGH SCGQGAQIWD  300
FNLGRLRGNE EFKQVEVAYG ASDSVFMIKN FNELMKETSL TNTEIFGEMY PMNCPVTHDD  360
MASFNNNSNN PTANQGSATS ESNNLPIARP SSGSAFGKPK GSSSSKNIQF EQPFLVRTTA  420
AAKANLELLA QNRGNAMQRY KEKKKTRRYD KHIRYESRKA RADTRKRVKG RFVKASDAPE  480
G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.197030.0root| vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483026.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLV4SVZ30.0V4SVZ3_9ROSI; Uncharacterized protein
STRINGXP_006483026.10.0(Citrus sinensis)
STRINGXP_006438833.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-113B-box type zinc finger protein with CCT domain