PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032441m

Common Name

CICLE_v10032441mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 267aa MW: 27597.8 Da PI: 10.3894

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032441m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.8	3.7e-38	31	127	2	97
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......k 89 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ ++ +s + + Ciclev10032441m 31 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSVRGGGNSTSlsstvsS 123 689*************************************************************99999777.333333333222223322221 PP TCP 90 aaksaaks 97 +a s Ciclev10032441m 124 ----SAIS 127 ....2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.3E-34	37	186	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSNSDGATNG VSNGAIIDPQ RQQPPGNGAL TVKKPPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSVRG GGNSTSLSST 120 VSSSAISAAL EHKPSLGPAP FILGKRVRSD DDGTKGEDSI SAVGPATVGP IVGPATPGGG 180 FWALPARPDF GQVWSFAAAA APEMVVQAAS QQQHHHHQQP HQLFMQQAMG EASAARVGNY 240 LPGHLNLLAS LSGGPGSSGR REEDPR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.7421	0.0	abscission zone\| fruit

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437619.1	0.0	transcription factor TCP7
Swissprot	Q9FMX2	3e-95	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A067ENE6	0.0	A0A067ENE6_CITSI; Uncharacterized protein
TrEMBL	A0A2H5P3J5	0.0	A0A2H5P3J5_CITUN; Uncharacterized protein
TrEMBL	V4VEH8	0.0	V4VEH8_9ROSI; Uncharacterized protein
STRING	XP_006437619.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-70	TCP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10032441m
Entrez Gene	18043909