PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025181m
Common NameCICLE_v10025181mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 616aa    MW: 68381.6 Da    PI: 6.8122
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025181mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14293352155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Ciclev10025181m 293 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 352
                      78*******************655454478446**********99*************98 PP
2AP2483.2e-15395446155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Ciclev10025181m 395 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 446
                      78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-16293362IPR016177DNA-binding domain
CDDcd000183.11E-21293362No hitNo description
PfamPF008474.0E-11293352IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-15294361IPR001471AP2/ERF domain
SMARTSM003801.3E-27294366IPR001471AP2/ERF domain
PROSITE profilePS5103218.769294360IPR001471AP2/ERF domain
PRINTSPR003671.5E-6295306IPR001471AP2/ERF domain
CDDcd000184.74E-25395456No hitNo description
PfamPF008476.4E-10395446IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17395456IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-18396454IPR001471AP2/ERF domain
SMARTSM003803.6E-34396460IPR001471AP2/ERF domain
PROSITE profilePS5103219.006396454IPR001471AP2/ERF domain
PRINTSPR003671.5E-6436456IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDHEGN FVNRDEQEQP QSCFSSTHHH HHEPPLTAMP LRSDGSLSLH  60
VPQDWRYENN GSGGASHEDR HQGPKLEDFL GSCCYSNSPS TDADDQNQHN GINVNIVPSS  120
CFNVDNNGDF DLETTTENLT SHPSSIIHRH YNQHHHHPQT QTLNPSYTHN DDVMYHHHFL  180
HQHQHVPFES ATSVAGFKSW LRQTPFASSS SSAEKSAAAS DTNQGNNCGF QPLSLAMNPT  240
SAEQNGPIIT TAITPLQVQG VAADNRKRPM GKATAAKEPV PRKSIDSFGQ RTSQYRGVTR  300
HRWTGRYEAH LWDNSCRKEG QTRKGRQVYL GGYDKEDKAA RAYDLAALKY WGATTHINFP  360
LSTYEKELEE MKHMTRQEFV ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK  420
DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV TNFDISRYDV KRICSSSTLI ASDLAKRSQK  480
DSAPLVLEDY NSCASSASPQ PLAISNGEAS DELVDMVWSA NSDDHQHQNT NTNNETSLGA  540
SGSRNSSNPE SPKCPVGLTS EFGMSGAEYT QGYFSSPGTK YENCDDDNGG NHSTNNRLLN  600
LGLVHHVPMF ALWNE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426649.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-139AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLV4UKI80.0V4UKI8_9ROSI; Uncharacterized protein
STRINGXP_006426649.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-133AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]