PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015173m
Common NameCICLE_v10015173mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 462aa    MW: 51469.8 Da    PI: 5.2381
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015173mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.91.2e-091659340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+++ +k+++++C  ++ +lC+ C  + H+       H++v
  Ciclev10015173m 16 ARACDNCIKKRARWYCAADDAFLCQACDASVHSAnplarrHERV 59
                     578*****************************657888888876 PP
2CCT67.92.7e-23402445144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Ciclev10015173m 402 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 445
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9361461IPR000315B-box-type zinc finger
SMARTSM003367.0E-111461IPR000315B-box-type zinc finger
PfamPF006437.0E-81659IPR000315B-box-type zinc finger
CDDcd000212.22E-91761No hitNo description
PfamPF062037.9E-18402444IPR010402CCT domain
PROSITE profilePS5101716.083402444IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSSNKNVANA VGGKTARACD NCIKKRARWY CAADDAFLCQ ACDASVHSAN PLARRHERVR  60
LKTASNKSSG SESLSDNTHV PSWHRGFTRK ARTPRKTGKP IRNVTLPLVP EVGADELSHE  120
ENEEDQLLYN CRVPTYDPFV AELCTSTANS NEAAENNNAT AKTDAHDDES TADDAVNGSE  180
SKPVRACYNG DVDSLHGFLP SDMDLAEFAA DVESMLGRGL VNESFAMEEL GLVDFREKDF  240
TVKVEQQEGA VEAEGARDIE ECKVFDNNNN YNNHDQIDLE REPFELNFDY DSPATCGDED  300
EKIVKEEMET SGEGCHEDDD EAKKNNKKKR KILLSLDYES VIKSWASQGS PWTNGDRPNF  360
DPEECWPDCM GTCGTEGHKY LQHPYGDFSG IGAHPATVDG GREARVSRYR EKRRTRLFSK  420
KIRYEVRKLN AEKRPRMKGR FVKRASFAGG PPAFPLFGKT N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412428RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448477.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2H5P6130.0A0A2H5P613_CITUN; Uncharacterized protein
TrEMBLV4U7270.0V4U727_9ROSI; Uncharacterized protein
STRINGXP_006448477.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-106B-box type zinc finger protein with CCT domain