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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012754m | ||||||||
Common Name | CICLE_v10012754mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 211aa MW: 22056.8 Da PI: 7.0856 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.3e-35 | 43 | 126 | 6 | 70 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssa 70 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt ss+++ Ciclev10012754m 43 SSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpavavssstagptpmsSSPPS 126 789*********************************************************444444444444443333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.7E-30 | 44 | 115 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.466 | 45 | 99 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MASEMALQTH QNPNPNSVTP TTTESAAKTE LAHPRKRSSS SSSSTKDRHT KVNGRGRRVR 60 MPPLCAARIF QLTRELGHRS DGETIEWLLR QAEPSIIAAT GTGTVPAVAV SSSTAGPTPM 120 SSSPPSLSCC VQPLSVSSQG MFLAADAEPQ PNCRLDLCQP LGLQFAGNGY RHIPFTALLL 180 QPAVAAAAAA AEEAEESGGQ EDIKVTGDCH * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428735.1 | 1e-153 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 9e-44 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | V4SSN2 | 1e-152 | V4SSN2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006428735.1 | 1e-152 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 1e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012754m |
Entrez Gene | 18039389 |