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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012612m | ||||||||
Common Name | CICLE_v10012612mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 241aa MW: 27657.1 Da PI: 9.7 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.2 | 6.1e-38 | 30 | 133 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 ++k+drhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++ +aikel +++ + + Ciclev10012612m 30 PVKRDRHSKICTAQGFRDRRVRLSIEIAREFFDLQDMLGFDKASQTLEWLFNKSRKAIKELIELKRPCN------------------------- 98 579*************************************************************55555......................... PP TCP 96 kskksqksaasalnlakesrakarararertrekmriknk 135 +s++ + +lak+sr +ararar+rtrekm++k Ciclev10012612m 99 -----GTSKQLMEKLAKKSRDQARARARQRTREKMFKKFA 133 .....455667799*********************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.1E-34 | 31 | 95 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.023 | 32 | 90 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.012 | 110 | 127 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAFTGNASAV VNREHYDHPS SFIRNEKPVP VKRDRHSKIC TAQGFRDRRV RLSIEIAREF 60 FDLQDMLGFD KASQTLEWLF NKSRKAIKEL IELKRPCNGT SKQLMEKLAK KSRDQARARA 120 RQRTREKMFK KFADTTPQIS TQIKACQESS SYVVSHDQVQ EPCSSTLACQ TQENQAPTDR 180 NQNPSSNFAH DQQNLEISKD TISCNTSNYN FNLPQNWDIV SAMPHQYTVC RAITKHESLN 240 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024955808.1 | 1e-165 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | V4UWE6 | 1e-180 | V4UWE6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430819.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6733 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 8e-33 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012612m |
Entrez Gene | 18039985 |